Locus 3687

Sequence ID 2R_DroMel_CAF1
Location 12,241,066 – 12,241,179
Length 113
Max. P 0.654772
window5995

overview

Window 5

Location 12,241,066 – 12,241,179
Length 113
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 75.60
Mean single sequence MFE -33.72
Consensus MFE -15.68
Energy contribution -15.68
Covariance contribution 0.00
Combinations/Pair 1.18
Mean z-score -1.92
Structure conservation index 0.47
SVM decision value 0.25
SVM RNA-class probability 0.654772
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12241066 113 + 20766785
CAAUUUAUAGUAUCCAUGGCCAUAAAUUGGCCAGCAGCCCGCUUGUUGCCCCACCACAUGUCACAG--GC-UUUUGGCCAACGGAAGGCAAGGAAUUCUGGCCAAAAUAGGCU--GAA
................((((((.....)))))).(((((.((((((.((..........)).))))--))-((((((((..(....)....((....))))))))))..))))--).. ( -38.50)
>DroPse_CAF1 105843 99 + 1
CAAUUUAUAGUAUCCAUGGCCAUAAAUUGGUCCGCG--------------CCGGCACAUGUCAUG---ACUUUG--AGGGGCAGAACCCAAAGAAUUCUGGCCAAAAUAGGCACAGAA
..............((((((......(((((....)--------------)))).....))))))---.(((((--.((.......)))))))..((((((((......))).))))) ( -25.60)
>DroEre_CAF1 109964 111 + 1
CAAUUUAUAGUAUCCAUGGCCAUAAAUUGGCCAGCAGCCCGCUU-UUGC-CCGCCACAUGUCACG---GCUUUUUGGCCAAGGGAAGGCAAGGAAUUCUGGCCAAAAUAGGCU--GAA
............(((.((((((.....))))))((..(((((..-..))-..............(---(((....))))..)))...))..))).(((.((((......))))--))) ( -35.50)
>DroYak_CAF1 105176 113 + 1
CAAUUUAUAGUAUCCAUGGCCAUAAAUUGGCCAGCAGCCCGCUUAUUGC-CCGCCACAUGUCACGG--GCUUUUGGGCCAACGGAAGGCAAGGAAUUCUGGCCAAAAUAGGCU--GAA
............(((.((((((.....))))))((.(((((......((-(((..........)))--))...)))))...(....)))..))).(((.((((......))))--))) ( -38.80)
>DroAna_CAF1 93573 105 + 1
CAAUUUAUAGUAUCCAUGGCCAUAAAUUGGCCAGCAGCG--GCA-GCGG-CAGCGGCAUGUCACAGUGACUUUGGGGGCAGC----GGCAAGGAAUUGUGGCCGAAGUAGGCA-----
.....((((((.(((.((((((.....))))))((.((.--...-)).)-).((.((.((((.(((.....)))..))))))----.))..)))))))))(((......))).----- ( -38.30)
>DroPer_CAF1 106777 99 + 1
CAAUUUAUAGUAUCCAUGGCCAUAAAUUGGUCCGCG--------------CCGGCACAUGUCAUG---ACUUUG--AGGGGCAGAACCCAAAGAAUUCUGGCCAAAAUAGGCACAGAA
..............((((((......(((((....)--------------)))).....))))))---.(((((--.((.......)))))))..((((((((......))).))))) ( -25.60)
>consensus
CAAUUUAUAGUAUCCAUGGCCAUAAAUUGGCCAGCAGCC__CUU_UUGC_CCGCCACAUGUCACG___ACUUUG_GGCCAACGGAAGGCAAGGAAUUCUGGCCAAAAUAGGCA__GAA
.......(((..(((..(((((.....)))))............................................(((.......)))..)))...)))(((......)))...... (-15.68 = -15.68 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:55 2006