Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,239,644 – 12,239,752 |
Length | 108 |
Max. P | 0.954554 |
Location | 12,239,644 – 12,239,752 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 80.44 |
Mean single sequence MFE | -30.48 |
Consensus MFE | -17.26 |
Energy contribution | -17.26 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.20 |
Mean z-score | -2.52 |
Structure conservation index | 0.57 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954554 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12239644 108 - 20766785 GGGCUAAGUGGGCAGAUC-CCAGACAUGGUCUUAGGCCAUGUAAAUGGGGGUUUUCAACAACC--CACCAUCCACCAUCUACCAUCCAACAGCCACUAGUCACCAUCUA------CC .(((((.((((.(.....-(((.(((((((.....)))))))...)))(((((......))))--).........................))))))))))........------.. ( -32.50) >DroSec_CAF1 100592 94 - 1 GGGCUAAGUGGGCAGAUC-CCAGACAUGGUCUUAGGCCAUGUAAAUGGGGGUUCUCAACAACC--CACCAUCGACCAUC--------------CACCAGUCACCAUCUA------CC .((((..(((((......-(((.(((((((.....)))))))...)))(((((......))))--)...........))--------------))).))))........------.. ( -30.10) >DroSim_CAF1 97586 91 - 1 GGGCUA-GUGGGCAGAUC-CCAGACAUGGUCUUAGG-CAUGUA-AUGGGGGUUCUCAACAACC--CACCAUCUACCAUC--------------CACCAGUCACCAUCUA------CC .((((.-((((((.((..-(((....)))..))..)-)..(((-(((((((((......))))--).)))).)))...)--------------))).))))........------.. ( -27.20) >DroEre_CAF1 108556 101 - 1 GGGCUAAGUGGGCAGAUC-CCAGACAUGGUCUUAGGCCAUGUAAAUGGGGGUUCUCAACAACC--CACCAUCCACCAUC-------CAGCAGGCACCAGUCACCAUCUA------CC (((((..((((...(((.-(((.(((((((.....)))))))...)))(((((......))))--)...)))..)))).-------.))).(((....))).)).....------.. ( -33.90) >DroAna_CAF1 92372 102 - 1 A-GCUAAGUGGGCAGAUCCCCAGACAUGGACUUAGGCCAUGUAAAUGGGGGUUCUCAACAGGCACAACUACAUCCUAUA--------------CACUAUACAGUAUCCACCCCUCCC .-(((...((((..((((((((.((((((.(....)))))))...))))))))))))...))).............(((--------------(........))))........... ( -28.70) >consensus GGGCUAAGUGGGCAGAUC_CCAGACAUGGUCUUAGGCCAUGUAAAUGGGGGUUCUCAACAACC__CACCAUCCACCAUC______________CACCAGUCACCAUCUA______CC ((.....((((........(((.(((((((.....)))))))...))).((((......))))....))))...))......................................... (-17.26 = -17.26 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:54 2006