| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,237,415 – 12,237,524 |
| Length | 109 |
| Max. P | 0.589243 |
| Location | 12,237,415 – 12,237,524 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 76.17 |
| Mean single sequence MFE | -25.14 |
| Consensus MFE | -14.89 |
| Energy contribution | -14.75 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.59 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589243 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12237415 109 - 20766785 ACGCGCUUUUGGCCUUCGGGCAAUAAACUUUACU-----CAGCCAUUGGAGCUUGGGGCAU----CUUUUCUACUCCAAACUUUUUACAUUUGUGGCAAAUGUUGCAUCAUCAUUAAU ..((.......(((....))).............-----..(((((.((((.((((((...----........)))))).))))........))))).......))............ ( -24.00) >DroVir_CAF1 124218 101 - 1 ACGCGCUUUUGGCCUUCGGGCGUUAAACUUUGCCGCUGUGCGCCAC---------GGGCGU----UUUUUUUAUUUCUUA----CAACAAUUGUGGCAAAUGUUGCAUCAUCAUUAAC ..((.......(((....)))....(((((((((((...(((((..---------.)))))----...............----........)))))))).)))))............ ( -26.57) >DroPse_CAF1 101570 110 - 1 ACGCGCUUUUGGCCUUCGGGCAUUAAACUUUACU-----UAGCCAUA---GCCAAAGGCAUAGCCAUGUUUCCCCCUUAACUUUUUACAUUUGUGGCAAAUGUUGCAUCAUCAUUAAU ..(((((((((((.....(((.............-----..)))...---)))))))))...((((((.......................)))))).......))............ ( -25.76) >DroYak_CAF1 101619 109 - 1 ACGCGCUUUUGGCCUUCGGGCAAUAAACUUUACA-----CAGCCAUUGGAGCUUGGGGUAU----CUUUUCUGCUCCUAACUUUUUACAUUUGUGGCAAAUGUUGCAUCAUCAUUAAU ..((.......(((....))).............-----..(((((.(((((..(..(...----..)..).)))))...............))))).......))............ ( -25.89) >DroAna_CAF1 90447 102 - 1 GCGCG-UUUCGGCCUUCGGGCAUUAAACUUUACU-----UAGCCAUGGGUGCCUUGGC--U----UUUUUCCGCUCGCAACUUUUUACAUUUGUGGCAAGUGUUGCAUCAUCAC---- (((.(-(((..(((....)))...))))......-----.(((((.((...)).))))--)----......)))..((((((((((((....)))).))).)))))........---- ( -27.60) >DroPer_CAF1 102477 110 - 1 ACGCGCUUUUGGCCUUCGGGCAUUAAACUUUACU-----UAGCCAUA---UCCAAAGGCAUAGCUAUGUUUCCCUCUUAACUUUUUACAUUUGUGGCAAAUGUUGCAUCAUCAUUAAU ....((((((((((....)))......((.....-----.)).....---..)))))))...((.((((((.((.(................).)).)))))).))............ ( -20.99) >consensus ACGCGCUUUUGGCCUUCGGGCAUUAAACUUUACU_____UAGCCAUA___GCCUAGGGCAU____AUUUUCCACUCCUAACUUUUUACAUUUGUGGCAAAUGUUGCAUCAUCAUUAAU ..((.......(((....)))....................(((((..............................................))))).......))............ (-14.89 = -14.75 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:51 2006