Locus 3683

Sequence ID	2R_DroMel_CAF1
Location	12,237,293 – 12,237,386
Length	93
Max. P	0.773587

overview

Window 9

Location	12,237,293 – 12,237,386
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	92.90
Mean single sequence MFE	-29.84
Consensus MFE	-24.02
Energy contribution	-24.46
Covariance contribution	0.44
Combinations/Pair	1.04
Mean z-score	-1.63
Structure conservation index	0.80
SVM decision value	0.54
SVM RNA-class probability	0.773587
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12237293 93 + 20766785
AGAUGUGGAAAGCUUGUGCUCCACAGAAGAUGCGGGGUGUACUUUAGUGGAUGGAGGACCACAGGCCCCAACCAAGCGAAACAUCAUCACCGA
.(((((.....(((((...(((((.((((.(((.....))))))).)))))(((.((.((...)))))))..)))))...)))))........ ( -29.50)
>DroSec_CAF1 98266 93 + 1
AGAAGUGGAAAGCUUGUGCUCCACAGAAGAUGCGGGGUGUACUCUUGUGGAUGGGGGACCACAGGCCCCAACCAAGCGAAACAUCAUCACCGA
....(((((..((....)))))))........(((((((...((...(((.(((((.........))))).)))...)).....)))).))). ( -28.70)
>DroSim_CAF1 95246 93 + 1
AGAAGUGGAAAGCUUGUGCUCCACAGAAGAUGCGGGGUGUACUUUUGUGGAUGGGGGACCACAGGCCCCAACCAAGCGAAACAUCAUCACCGA
.((.(((....(((((...((((((((((.(((.....)))))))))))))..((((.((...))))))...)))))....)))..))..... ( -32.30)
>DroEre_CAF1 106176 93 + 1
AUAAGUGGAAAGAUUGUGCUCCACAGCAGAUGCGGGGUGUACUUUUGUAGUUGGGGGACCACAAGCCCCAACCGAGCGAAACAUCAUCACCGA
....(((((..........)))))........(((((((...((((((.(((((((.........)))))))...))))))...)))).))). ( -29.10)
>DroYak_CAF1 101497 93 + 1
AGAAGUGGAAAUAUUGUGCUCCACAGAAGGUGCGGGGUGUAGUUUUGCAGAUGGGGGACCACAAGCCCCAACCAAGCGAAACAUCAUCACCGA
....(((((..........)))))........(((((((..(((((((.....((((........))))......)))))))..)))).))). ( -29.60)
>consensus
AGAAGUGGAAAGCUUGUGCUCCACAGAAGAUGCGGGGUGUACUUUUGUGGAUGGGGGACCACAGGCCCCAACCAAGCGAAACAUCAUCACCGA
....(((((..........)))))........(((((((...((((((.....((((.(.....)))))......))))))...)))).))). (-24.02 = -24.46 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:50 2006