Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,232,753 – 12,232,851 |
Length | 98 |
Max. P | 0.968712 |
Location | 12,232,753 – 12,232,851 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 77.41 |
Mean single sequence MFE | -20.75 |
Consensus MFE | -13.11 |
Energy contribution | -13.00 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.24 |
Mean z-score | -2.29 |
Structure conservation index | 0.63 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968712 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12232753 98 + 20766785 CCUCAUAAAAAUCCGAAUUAUUUGCGGAACUACCAUGG-AGACAUGGA-CAGGAAUGCCCUUUACCCCAUUCCAGCCAAAGUUCCC----CACUUCUC-CGACAG ......................((.((((((.(((((.-...))))).-..((((((..........))))))......)))))).----))......-...... ( -24.50) >DroVir_CAF1 117990 79 + 1 C--AACAAAAAUGCGAAUUAUUUACGCAAGUACAACGUGAGGUCUGCAGUACGAAUGCCAAU----AUAUUCCAGC------------------UCUCAUGA--G .--........((((((....)).)))).......((((((..(((......(((((.....----.)))))))).------------------.)))))).--. ( -14.90) >DroSec_CAF1 93786 99 + 1 CCUCAUAAAAAUCCGAAUUAUUUGCGGAACUACCAUGG-AGACAUGGA-CAGGAAUGCCCUUUACCCCAUUCCAGCCAAUUUCCCC----CACUUCUCCCCACUG ...........((((((....)).))))....(((((.-...))))).-..((((((..........)))))).............----............... ( -19.60) >DroSim_CAF1 90692 99 + 1 CCUCAUAAAAAUCCGAAUUAUUUGCGGAACUACCAUGG-AGACAUGGA-CAGGAAUGCCCUUUACCCCAUUCCAGCCAAUGUCCCC----CACUUCGCCCCACUG .......................(((((....(((((.-...))))).-..((((((..........)))))).............----...)))))....... ( -21.10) >DroEre_CAF1 101617 99 + 1 CCUCAUAAAAAUCCGAGUUAUUUGCGGAACUACCAUGG-AGACAUGGA-CAGGAAUGCCCCUUACCCCAUUCCAUCCAAAGUCCCCC--CCACUUG--GCGACUU .(((..........)))........(((....(((((.-...))))).-..((((((..........)))))).))).(((((((..--......)--).))))) ( -25.40) >DroYak_CAF1 96888 103 + 1 CCUCAUAAAAAUCCGAGUUAUUUGCGGAACUACCAUGG-CGACAUGGC-CAGGAAUGCCCUUUACCCCAUUCCAUCCAAAGUCCCCCCACCACUUCCCCCGACUU .(((..........)))........(((....(((((.-...))))).-..((((((..........)))))).))).(((((.................))))) ( -19.03) >consensus CCUCAUAAAAAUCCGAAUUAUUUGCGGAACUACCAUGG_AGACAUGGA_CAGGAAUGCCCUUUACCCCAUUCCAGCCAAAGUCCCC____CACUUCUCCCGACUG ...........((((((....)).))))....(((((.....)))))....((((((..........))))))................................ (-13.11 = -13.00 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:46 2006