Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,355,067 – 2,355,185 |
Length | 118 |
Max. P | 0.998553 |
Location | 2,355,067 – 2,355,185 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.15 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -25.44 |
Energy contribution | -25.80 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.03 |
Mean z-score | -2.40 |
Structure conservation index | 0.89 |
SVM decision value | 3.14 |
SVM RNA-class probability | 0.998553 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2355067 118 - 20766785 CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUUGCCAACAAACUUGUGGCAGUCGCAUAAAAUGCCUCGACUACCCC--UGAGCCUAAAAGCAUGCACACACGCGGCAACAAAGCCAAC .............(((((..(((((((.......((((.((....))))))((((((((...))))...)))).....--))))))).)))))..((......))(((......)))... ( -30.40) >DroSec_CAF1 4676 120 - 1 CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUCGCCAACAAACUUGUGGCAGUCGCAUAAAAUGGCUCGACUACCCCUCUGAGCCUAAAAGCAAGCACACACGCGGCAACAAAGCCAAC .............(((((..(((((((.......((((.((....))))))((((((........))..)))).......))))))).)))))..((......))(((......)))... ( -30.10) >DroSim_CAF1 4739 120 - 1 CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUCGCCAACAAACUUGUGGCAGUCGCAUAAAAUGCCUCGACUACCCCUCUGAGCCUAAAAGCAUGCACACACGCGGCAACAAAGCCAAC .............(((((..(((((((.......((((.((....))))))((((((((...))))...)))).......))))))).)))))..((......))(((......)))... ( -30.70) >DroEre_CAF1 4571 118 - 1 CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUUGCCAACAAACUUGUGGCAGUCGCAUAAAAUGCCUCCACUACCUC--UGAGCCUAAAAGUAUGCACACACGCGGCAACAAAGCCAAC ....................(((((((.....((((((.((....))))))))..((((...))))............--)))))))........((......))(((......)))... ( -26.20) >DroYak_CAF1 4520 118 - 1 CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUUGCCAACAAACUUGUGGCAGUCGCAUAAAAUGCCUCCACUACCCC--CGAGCCUAAAAGUAUGCACACACGCGGCAACAAAGCCAAC ....................((((((......((((((.((....))))))))..((((...))))............--.))))))........((......))(((......)))... ( -25.70) >consensus CACUGAAUUAAAAGUUUUACGGGCUCAAACUUUUGCCAACAAACUUGUGGCAGUCGCAUAAAAUGCCUCGACUACCCC__UGAGCCUAAAAGCAUGCACACACGCGGCAACAAAGCCAAC .............(((((..((((((........((((.((....))))))((((((((...))))...))))........)))))).)))))..((......))(((......)))... (-25.44 = -25.80 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:38 2006