Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,226,811 – 12,226,912 |
Length | 101 |
Max. P | 0.613814 |
Location | 12,226,811 – 12,226,912 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 82.17 |
Mean single sequence MFE | -28.48 |
Consensus MFE | -13.41 |
Energy contribution | -13.55 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.13 |
Mean z-score | -2.94 |
Structure conservation index | 0.47 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.613814 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12226811 101 - 20766785 AAGUUUGCUGGCAACAAAGGAAACGAUUUGUG--------GCCAGUUGUCAUAGAUUAUCAAAUCAAGUCUGC---CGGCAAAGAAAUGGGAAA------ACAAAUA--AUUUGAUUUGA ...((((((((((((...(....)((((((((--------((.....))))))))))..........)).)))---)))))))...........------.(((((.--.....))))). ( -28.70) >DroSec_CAF1 87933 101 - 1 AAGUUUGCUGGCAACAAUGGAAACGAUUUGUG--------GCCAGUUGUCAUAGAUUAUCAAAUCAAGUCUGC---CGGCAAUGAAAUGGGAAA------ACAAAUA--GUUUGUUUUGA ....(((((((((((...(....)((((((((--------((.....))))))))))..........)).)))---)))))).........(((------((((...--..))))))).. ( -28.80) >DroSim_CAF1 84353 101 - 1 AAGUUUGCUGGCAACAAAGGAAACGAUUUGUG--------GCCAGUUGUCAUAGAUUAUCAAAUCAAGUCUGC---CGGCAAAGAAAUGGGAAA------ACCAAUA--GUUUGAUUUGA ...((((((((((((...(....)((((((((--------((.....))))))))))..........)).)))---)))))))....(((....------.)))...--........... ( -29.70) >DroEre_CAF1 95790 104 - 1 AAGUUUGCUGGCCACAAAGGAAACGAUUUGUG--------GCCAGUUGUCAUAGAUUAUCAAAUCAAGUCUGCUGCUGGCACAGAAAUGGGAAA------ACAAAUA--AUUUGAUUUGA ..(...(((((((((((.(....)...)))))--------))))))...)........(((((((((((.(((.....)))((....)).....------.......--))))))))))) ( -35.20) >DroYak_CAF1 90952 101 - 1 AAGUUUGUUGGCAACAAAGGCAACGAUUUGUG--------GCCAGUUGUCAUAGAUUAUCAAAUCAAGUCUGC---CGGACGAGAAAUAGGAAA------AUAAAUA--AUUUGAUUUGA .(((((((.((((((...(((.((.....)).--------))).))))))))))))).((((((((((((...---..))).(....)......------.......--..))))))))) ( -24.20) >DroPer_CAF1 90865 104 - 1 AAGUUUGUUGGCCACAGAGGAAACGAUUUGUGGGCUGCCUGCCAGUCAUCAUAGAUUAUCAUCUCAAGA----------------AGGGGGAAAUAGACUACAGAUGGGAUUUGAUUUGA .(((((((((.((((((((....)..))))))).)...((.((((((......))))....((....))----------------.)).)).)))))))).(((((........))))). ( -24.30) >consensus AAGUUUGCUGGCAACAAAGGAAACGAUUUGUG________GCCAGUUGUCAUAGAUUAUCAAAUCAAGUCUGC___CGGCAAAGAAAUGGGAAA______ACAAAUA__AUUUGAUUUGA ..(...((((((.((((.(....)...)))).........))))))...)........(((((((((((........................................))))))))))) (-13.41 = -13.55 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:42 2006