Locus 3677

Sequence ID 2R_DroMel_CAF1
Location 12,225,620 – 12,225,740
Length 120
Max. P 0.837560
window5981

overview

Window 1

Location 12,225,620 – 12,225,740
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.75
Mean single sequence MFE -32.12
Consensus MFE -28.82
Energy contribution -29.22
Covariance contribution 0.40
Combinations/Pair 1.15
Mean z-score -1.35
Structure conservation index 0.90
SVM decision value 0.74
SVM RNA-class probability 0.837560
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12225620 120 + 20766785
CUUCUGAUGCUGCGGGACCGACUUGGUUCUUUGCCAGAAAAUAUCAGUAUUAAAUGCAAUAAGGCUGAUUAGCCUGCGGCGGUACGUUCGUAGAUAUCUGAGAAUAUUUGGAAAAUUGAA
.(((..((((((((((......(((((.....))))).....((((((.(((.......))).))))))...)))))))))....((((.(((....))).))))..)..)))....... ( -31.40)
>DroSec_CAF1 86685 120 + 1
CUUUUGAUGCUGCGGGACCAACUUGGUUCUUUGCCAGAAAAUAUCAGUAUUAAAUGCAAUAAGGCUGAUUAGCCUGCGGCGGUACGUUCGUAGAUAUCUGAGAAUAUUUGGAAAAUUGAA
.(((..((((((((((......(((((.....))))).....((((((.(((.......))).))))))...)))))))))....((((.(((....))).))))..)..)))....... ( -29.70)
>DroSim_CAF1 83134 120 + 1
CUUCUGAUGCUGCGGGACCAACUUGGUUCUUUGCCAGAAAAUAUCAGUAUUAAAUGCAAUAAGGCUGAUUAGCCUGCAGCGGUACGUUCGUAGAUAUCUGGGAAUAUUUGGAAAAUUGAA
.(((..((((((((((......(((((.....))))).....((((((.(((.......))).))))))...)))))))))....((((.(((....))).))))..)..)))....... ( -34.20)
>DroEre_CAF1 94578 120 + 1
CUUCUGAUGCGGCGGGAUCUGCUUGGUUCUUUGCCAGAAAAUAUCAGCAUUAAAUGCAAUAAGGCUGAUUAGCCUGCGUCGGUAUUUUUAUAGAUAUCUGAGAAUAUUUGGAAAAUUGAA
.((((((((((((..((((.(((((((.....)))...........((((...))))....)))).)))).))).)))))((((((((((........)))))))))).))))....... ( -31.40)
>DroYak_CAF1 89631 120 + 1
CUUCUGAAGCGGCGGGACCAGCUUGGUUCUUUGCCAGAAAAUAUCAGCAUUAAAUGCAAUAAGGCUGAUUAGCCUGCAGCGGCACUAUCGCAGAUAUCUGGGAAUAUUUGGAAAAUUAAA
.(((..((((.((((((((.....)))))).(((............((((...))))....(((((....)))))))))).))....((.(((....))).))...))..)))....... ( -33.90)
>consensus
CUUCUGAUGCUGCGGGACCAACUUGGUUCUUUGCCAGAAAAUAUCAGUAUUAAAUGCAAUAAGGCUGAUUAGCCUGCGGCGGUACGUUCGUAGAUAUCUGAGAAUAUUUGGAAAAUUGAA
.(((..(.((((((((......(((((.....))))).....((((((.(((.......))).))))))...)))))))).....((((.(((....))).))))..)..)))....... (-28.82 = -29.22 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:41 2006