Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,223,016 – 12,223,109 |
Length | 93 |
Max. P | 0.615133 |
Location | 12,223,016 – 12,223,109 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 79.53 |
Mean single sequence MFE | -23.72 |
Consensus MFE | -13.73 |
Energy contribution | -14.70 |
Covariance contribution | 0.97 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.58 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.615133 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12223016 93 + 20766785 CUGUAAAAACAGCAACACA-------ACA-------ACACAAACUCUGCCGGAGUUUGCCAUCGCAAAAUAGAGCGAUUAAAGUUGGCAGA--CAGCAGGUCAGAGGAG ((((....)))).......-------...-------.......(((((((...((((((((((((........)))).......)))))))--)....)).)))))... ( -27.01) >DroSec_CAF1 84112 95 + 1 CUGUGAAAACAGCAACACA-------ACA-------ACACAAACUCUGCCGGAGUUUGCCCUCGCAAAAUAGAGCGAUUAAAGUUGGCAGACACAGCAGAUCGGAGGAG ((((....)))).......-------...-------...(((((((.....))))))).((((((........))((((...((((.......)))).)))).)))).. ( -24.50) >DroSim_CAF1 80546 85 + 1 CUGUAAAAACAGCAACACA-------ACA-------ACACAAACUCUGCCGGAGUUUGCGCUCGCAAAAUAGAGCGAUUAAAGUUGGCA---------GAUCGG-GGUG ((((....)))).......-------...-------.(((....((((((((..((..(((((........)))))...))..))))))---------))....-.))) ( -25.50) >DroEre_CAF1 92036 86 + 1 CUGUAAAAACAGCAACACA------------------CAUAAACUCUGCCGGAGUUUGCCCUCGCAAAAUAGAGCGAUUAAAGUUGGCAGA--C---AGGUCGGUUGGG ((((....)))).......------------------......(((.(((((.(((((((.((((........))))........))))))--)---...))))).))) ( -23.00) >DroYak_CAF1 87093 103 + 1 CUGUAAAAACAGCAACACACACUCACACAGACGCACACACAAACUCCGCCGGAGUUUGCCCUCGGAAAAUAGAGCGAUUAAAGUUGGCAGA--C---AGGUCGC-GGGG ((((....))))...........................((((((((...))))))))(((((........))((((((...(((....))--)---.))))))-))). ( -22.50) >DroAna_CAF1 78272 82 + 1 CUGUAAAAACAGCAACACA-------CAA-------CCACA---UC-----AGGUUUGCUCUGGCAAAAUAGAGCGAUUAAAGUUGGCAGA--C---AGGUCGUUAGGG ((((.....((((......-------..(-------((...---..-----.)))((((((((......)))))))).....))))....)--)---)).......... ( -19.80) >consensus CUGUAAAAACAGCAACACA_______ACA_______ACACAAACUCUGCCGGAGUUUGCCCUCGCAAAAUAGAGCGAUUAAAGUUGGCAGA__C___AGGUCGG_GGGG ((((....))))((((.......................(((((((.....)))))))...((((........)))).....))))....................... (-13.73 = -14.70 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:40 2006