| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,221,629 – 12,221,782 |
| Length | 153 |
| Max. P | 0.927109 |
| Location | 12,221,629 – 12,221,749 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 83.31 |
| Mean single sequence MFE | -33.40 |
| Consensus MFE | -21.22 |
| Energy contribution | -22.90 |
| Covariance contribution | 1.68 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.58 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.18 |
| SVM RNA-class probability | 0.927109 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12221629 120 + 20766785 GUGGACCUACACAGCAGUGGAGUCCAUGCCCGAAACAGACCAACAGCACGGUCAAUAUGCUGGGAAAAUUGCACCUAAAUUAAGCAUUAAUUAGGGCGUUUUCACAACAACAAAAUGUUC ((((((((((......)))).))))))......((((((((........))))....((.((.((((((.((.(((((.(((.....)))))))))))))))).)).))......)))). ( -31.40) >DroSec_CAF1 82704 117 + 1 GUGGACCUACACAGCAGUGGAGUCCAUGUCCGAAACAGACC---AGCAUGGUCAAUAUGCUGGGAAAAUUGCACCUAAAUUAAGCAUUAAUUAGGGCGUUUUCGCAACAACAAAAUAUUC ((((((((((......)))).))))))............((---((((((.....))))))))((((((.((.(((((.(((.....))))))))))))))))................. ( -35.20) >DroSim_CAF1 79141 117 + 1 GUGGACCUACACAGCAGUGGAGUCCAUGUCCGAAACAGACC---AGCAUGGUCAAUAUGCUGGGAAAAUUGCACCUAAAUUAAGCAUUAAUUAGGGCGUUUUCGCAACAACAAAAUUUUC ((((((((((......)))).))))))....((((....((---((((((.....))))))))((((((.((.(((((.(((.....)))))))))))))))).............)))) ( -35.30) >DroEre_CAF1 90664 115 + 1 GUGGACCUACACAGCAGUGGAGCCCAUGACCAAAACAGACC---AGCAUGGUCAAUAUGCUGGGAAAAUUGCACCUCAAUUGGUCAUUAAUUGGGGCGUUUUCACAAAA--AAAGUGCUC (((((.((((......)))).((((((((((........((---((((((.....))))))))...(((((.....)))))))))))......))))...)))))....--......... ( -35.00) >DroYak_CAF1 85741 96 + 1 GUGGACCUACACAACGAUGGAGUCCAUGCCCGAAACAGACC---AGCAUGGUCAAUAUGCCCGGAAAAUUGCACCUCAAUUGGGCAUUAAUUGGGA---------------------CUG (((((((((........))).)))))).(((((....((((---.....))))...(((((((....((((.....)))))))))))...))))).---------------------... ( -30.10) >consensus GUGGACCUACACAGCAGUGGAGUCCAUGCCCGAAACAGACC___AGCAUGGUCAAUAUGCUGGGAAAAUUGCACCUAAAUUAAGCAUUAAUUAGGGCGUUUUCACAACAACAAAAUGUUC ((((((((((......)))).))))))..........((((........)))).......((.((((((.((.(((.((((((...))))))))))))))))).)).............. (-21.22 = -22.90 + 1.68)
| Location | 12,221,669 – 12,221,782 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 87.14 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -17.04 |
| Energy contribution | -17.35 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.718592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12221669 113 + 20766785 CAACAGCACGGUCAAUAUGCUGGGAAAAUUGCACCUAAAUUAAGCAUUAAUUAGGGCGUUUUCACAACAACAAAAUGUUCUUAUCUCGGACAGUUAUAAGCAUAACUAAAUUA ...(((((.........))))).((((((.((.(((((.(((.....)))))))))))))))).............((((.......))))((((((....))))))...... ( -20.70) >DroSec_CAF1 82744 110 + 1 C---AGCAUGGUCAAUAUGCUGGGAAAAUUGCACCUAAAUUAAGCAUUAAUUAGGGCGUUUUCGCAACAACAAAAUAUUCUUAUCUGGGACAGUUAUAAGCAUAAAUAAAUUA (---((((((.....))))))).((((((.((.(((((.(((.....))))))))))))))))............(((.((((((((...)))..))))).)))......... ( -21.40) >DroSim_CAF1 79181 110 + 1 C---AGCAUGGUCAAUAUGCUGGGAAAAUUGCACCUAAAUUAAGCAUUAAUUAGGGCGUUUUCGCAACAACAAAAUUUUCUUAUCUGUGACAGUUAUAAGCAUAACUAAAUUA (---((((((.....)))))))((((((((...(((((.(((.....))))))))(((....)))........))))))))..........((((((....))))))...... ( -23.30) >DroEre_CAF1 90704 106 + 1 C---AGCAUGGUCAAUAUGCUGGGAAAAUUGCACCUCAAUUGGUCAUUAAUUGGGGCGUUUUCACAAAA--AAAGUGCUCUUAUUUGGGGCAGUUAUAGAAAUAAU-A-AAUA (---((((((.....))))))).((((((.((.((.((((((.....))))))))))))))))......--.((.((((((.....)))))).))...........-.-.... ( -28.50) >consensus C___AGCAUGGUCAAUAUGCUGGGAAAAUUGCACCUAAAUUAAGCAUUAAUUAGGGCGUUUUCACAACAACAAAAUGUUCUUAUCUGGGACAGUUAUAAGCAUAACUAAAUUA ....((((((.....))))))(.((((((.((.(((.((((((...))))))))))))))))).)..........((((((.....))))))..................... (-17.04 = -17.35 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:38 2006