| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,219,474 – 12,219,564 |
| Length | 90 |
| Max. P | 0.786918 |
| Location | 12,219,474 – 12,219,564 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 82.37 |
| Mean single sequence MFE | -23.50 |
| Consensus MFE | -15.82 |
| Energy contribution | -15.98 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.786918 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12219474 90 - 20766785 AACCCGAAUAGCCCGGAGAACAACAUGCA-----GCACUUAACAACUUGGAAUUGCUGCCAAACAGCAUUUUCAAUGUCAGGGCGAGGGAAUCCA ..(((.....(((((.....)........-----..........((((((((.(((((.....))))).)))))).))..))))..)))...... ( -23.90) >DroSec_CAF1 80534 84 - 1 ------AACAGCCCGGACAACAACAUGCA-----GCACUUAACAACUUGGAAUUGCUGCCAAACAGCAUUUUCAAUGUCAGGGCGAGGGAAUCCA ------....((((.((((......((..-----........))..((((((.(((((.....))))).)))))))))).))))..((....)). ( -23.20) >DroSim_CAF1 76960 90 - 1 AACCCGAACAGCCCGGACAACAACAUGCA-----GCACUUAACAACUUGGAAUUGCUGCCAAACAGCAUUUUCAAUGUCAGGGCGAGGGAAUCCA ..(((.....((((.((((......((..-----........))..((((((.(((((.....))))).)))))))))).))))..)))...... ( -27.20) >DroEre_CAF1 88461 90 - 1 AGCCCGAACAGCCCGAACAACAACAUGCA-----GCACUUAACAACUUGGAAUUGCUGCCAAACAGCAUUUUCAAUGUCAGGGCGAGGGAAUCCA ..(((.....((((..(((......((..-----........))..((((((.(((((.....))))).)))))))))..))))..)))...... ( -24.30) >DroYak_CAF1 83537 89 - 1 AGCCCGAACA------ACAACAACAUGCAGCGCAGCACUUAACAACUUGGAAUUGCUGCCAAACAGCAUUUUCAAUGUCAGGGCGAGGGAAUCCA .((((..(((------.........(((......))).........((((((.(((((.....))))).)))))))))..))))..((....)). ( -25.20) >DroAna_CAF1 74784 75 - 1 AACCCGGCCAACUC--------------------GCACUUAACAACUUGGAAUUGCUGCCAAGCAACAUUUUCAAUGUCAGGGCCAAAAAAGGGG ..(((((((..((.--------------------(((.........(((((((((((....)))))...))))))))).))))))......))). ( -17.20) >consensus AACCCGAACAGCCCGGACAACAACAUGCA_____GCACUUAACAACUUGGAAUUGCUGCCAAACAGCAUUUUCAAUGUCAGGGCGAGGGAAUCCA ..................................((.(((.(((..((((((.(((((.....))))).))))))))).)))))........... (-15.82 = -15.98 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:34 2006