| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,215,412 – 12,215,507 |
| Length | 95 |
| Max. P | 0.846065 |
| Location | 12,215,412 – 12,215,507 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 76.79 |
| Mean single sequence MFE | -20.34 |
| Consensus MFE | -13.60 |
| Energy contribution | -14.55 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.846065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12215412 95 + 20766785 --ACGAUUUCCAAGCCAAACCGGUUAAUUUAAAAACCCAUAAGAACCUAACAGAAUUCUCGACGACUUAAUGGUCGUGUUAACUGGUUUUCUUCUGA --..............((((((((((((........................((....)).((((((....))))))))))))))))))........ ( -18.90) >DroPse_CAF1 78557 88 + 1 UUUCCAAUCAUAAUCAUAACCCGUUCAAUUAGAACUCAAUAAAAACAUAGCC---AUUGAGGCGAAUU--UGGUUUUAUGAACUGGUUUUUGG---- ..............((.((((.(((((..((((((.(((..........(((---.....)))....)--))))))))))))).))))..)).---- ( -17.24) >DroSec_CAF1 76456 95 + 1 --ACGAAUUCCAAGCCAAACCGGUUAAUUUAAAAACCCAUAAGAACCUAACAGAGUUCUCGACGACUCAAUGGUCGUGUUAACUGGUUUUCUUCUGG --.......(((....((((((((((((.............((((((.....).)))))..((((((....)))))))))))))))))).....))) ( -23.30) >DroSim_CAF1 72841 95 + 1 --ACGAAUUCCAAGCACAACCGGUUAAUUUUAAAACCCAUAAGAACCUAACAGAGUUCUCGACGACUUAAUGGUCGUGUUAACUGGUUUUCUUCUGG --.......(((.....(((((((((((.............((((((.....).)))))..((((((....)))))))))))))))))......))) ( -23.00) >DroEre_CAF1 84433 95 + 1 --ACGGUAUCCAAGCCGAACCGGUUAACUUAAAACACCAUAAACACCUAACAGAGUUUCCGACGACUUAAUGGCCGUAUUAACUGGUUUUUUUCUGG --.((((......))))((((((((((.............((((.(......).))))...(((.((....)).))).))))))))))......... ( -16.90) >DroYak_CAF1 79539 95 + 1 --ACGAUACGAAAGCCAAACCGGUUAAUUUAAAACGCCAUAACAACCUAACAGGGUUCUCGGCGACUUAAUGAUCGUAUUAACUGGUUUUCUUCUGG --......((.(((..((((((((((((((((..((((.....(((((....)))))...))))..)))).......)))))))))))).))).)). ( -22.71) >consensus __ACGAAUUCCAAGCCAAACCGGUUAAUUUAAAAACCCAUAAGAACCUAACAGAGUUCUCGACGACUUAAUGGUCGUAUUAACUGGUUUUCUUCUGG ................(((((((((((...............((((........))))...((((((....)))))).)))))))))))........ (-13.60 = -14.55 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:28 2006