Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,201,267 – 12,201,371 |
Length | 104 |
Max. P | 0.730976 |
Location | 12,201,267 – 12,201,371 |
---|---|
Length | 104 |
Sequences | 3 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 90.38 |
Mean single sequence MFE | -18.37 |
Consensus MFE | -15.72 |
Energy contribution | -15.83 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.06 |
Mean z-score | -2.08 |
Structure conservation index | 0.86 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.730976 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12201267 104 - 20766785 AAUUAACUUUAACCAAGAUGAAACAAUACUCUCUUGUGACUUGGGAUUGAAACAAGAGAGGAAUUUAAAUGAAGCCAUUAGAAAAUACCAAAAUUACCAUCCAA ................((((........(((((((((..(........)..)))))))))...(((.((((....)))).)))..............))))... ( -17.90) >DroSec_CAF1 57428 104 - 1 AAUUAACUUUUACCAAGAUGAAACAGUACUCUCUUGUGGCUUAAGAAUCAUACAAGAGAGGAAUUUAAAUGAAGGCAUUACAAAAUAUGAAAAUUACCAUCUAA ...............(((((........((((((((((............)))))))))).......((((....))))..................))))).. ( -18.60) >DroSim_CAF1 57539 104 - 1 AAUUAACUUUUACCAAGAUGAAACAGUACUCUCUUGUGGCUUAAGAUUCAUACAAGAGAGGAAUUUAAAUGAAGAUAUUAGAAAAUAUAAAAAUUACCAUCUAA ...............(((((........((((((((((............)))))))))).......(((....(((((....)))))....)))..))))).. ( -18.60) >consensus AAUUAACUUUUACCAAGAUGAAACAGUACUCUCUUGUGGCUUAAGAUUCAUACAAGAGAGGAAUUUAAAUGAAGACAUUAGAAAAUAUAAAAAUUACCAUCUAA ................((((........((((((((((............)))))))))).......((((....))))..................))))... (-15.72 = -15.83 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:21 2006