Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,200,380 – 12,200,474 |
Length | 94 |
Max. P | 0.566096 |
Location | 12,200,380 – 12,200,474 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 81.97 |
Mean single sequence MFE | -26.90 |
Consensus MFE | -16.22 |
Energy contribution | -18.80 |
Covariance contribution | 2.58 |
Combinations/Pair | 1.21 |
Mean z-score | -1.94 |
Structure conservation index | 0.60 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.566096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12200380 94 - 20766785 GCUGAUGGUAUUGGUUGAGGGGCUUGUG--AAGGGGGCUUGGGGCGGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAG .(((((.((.(((((((.(((((((...--....)))))..((((.((((.((....)))))).))))......))..))))))).))...))))) ( -28.00) >DroPse_CAF1 62819 88 - 1 UGUGGUGG--------AAGGGGUGUGGGGGGUGGGGGCAGUGGAACGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAC .(((((..--------....(.(.(((..(.(((...((.((((..((((.((....))))))..)))).))..))).)..))).).)...))))) ( -23.70) >DroSim_CAF1 56660 94 - 1 GCUGAUGGUAUUGGUUAAGGGGCUUGUG--GAGGGGAGGUGGGGCGGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAG .(((((.((.(((((((.((..(...((--((..(..((..((((......)).))..))..)..))))..)..))..))))))).))...))))) ( -29.70) >DroEre_CAF1 69529 94 - 1 GAUGAUGGUGUUGGUUAAGGGGUCUUUG--GAGGGAGCUUGGGACGGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAG ..((((.((.(((((((..((.((....--(((....))).((((.((((.((....)))))).))))...)).))..))))))).))...)))). ( -27.40) >DroYak_CAF1 64365 93 - 1 AGUGAGGGUGUUGGUUAAGGGGUUUUUG--GAGGG-GCUUGGGGCGGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAG ..(((..((.(((((((...(((((...--...((-(((...(((((........)))))...)))))...)))))..))))))).))....))). ( -25.40) >DroPer_CAF1 63426 88 - 1 UGUGGUGG--------AAGGGGUGUGGGGGGUGGGGGCAGUGGAACGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCCAAAUCAC .(((((..--------...((.(.(((..(.(((...((.((((..((((.((....))))))..)))).))..))).)..))).).))..))))) ( -27.20) >consensus GGUGAUGGU_UUGGUUAAGGGGUUUGUG__GAGGGGGCUUGGGACGGUUAAGCAUUUGCUAACAGUCCAGUGAACCGGUAAUCAAAGCAAAAUCAG .(((((.((.(((((((..((.........(((....))).((((.((((.((....)))))).))))......))..))))))).))...))))) (-16.22 = -18.80 + 2.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:19 2006