| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,174,562 – 12,174,652 |
| Length | 90 |
| Max. P | 0.775113 |
| Location | 12,174,562 – 12,174,652 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 83.97 |
| Mean single sequence MFE | -26.32 |
| Consensus MFE | -18.34 |
| Energy contribution | -19.02 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775113 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12174562 90 - 20766785 CCCGAGUCUAGCUAC--AGACAUGUGUCUGGUCCCAUUUUCAUUUGUUGGGGAUGGUUAGGGUAGA-----GAUUAUCUUUAAGAUAG----UAUGAAGCC ......((((.((.(--((((....)))))...(((((..((.....))..)))))...)).))))-----.((((((.....)))))----)........ ( -25.40) >DroSec_CAF1 30797 91 - 1 CCCUAGUCUAGCUACACAGACAUGUGUCUG-UCCCAUUUUCGUUUGUUGGGUAUGGUUAGGGUAGA-----GAUUAUCUUAAUGAUAG----UAUGAAGCC ..(((.((((((((.((((((....)))))-)((((...........))))..)))))))).))).-----.((((((.....)))))----)........ ( -26.80) >DroSim_CAF1 30780 91 - 1 CCCUAGUCUAGCUACACAGACAUGUGUCUG-UCCCAUUUUCGUUUGUUGGGUAUGGUUAGGGUAGC-----GAUUAUCUUAAUGAUAG----UAUGAAGCC .((((.((((((((.((((((....)))))-)((((...........))))..)))))))).))).-----)((((((.....)))))----)........ ( -26.30) >DroYak_CAF1 36902 95 - 1 CCUGAGUCUAGCUAC--AGACAUGUGUCUG-UCCCAUUUUCGUUUGUUGGGGAUGGUUAGGGUAGAAAAAAGAAAAUGUUAGACAUAGUUGG---AAAGGC (((...(((((((((--((((....)))))-..(((((..((.....))..))))).............................)))))))---).))). ( -26.80) >consensus CCCGAGUCUAGCUAC__AGACAUGUGUCUG_UCCCAUUUUCGUUUGUUGGGGAUGGUUAGGGUAGA_____GAUUAUCUUAAAGAUAG____UAUGAAGCC ..(((.((((((((..(((((....)))))..((((...........))))..)))))))).))).........((((.....)))).............. (-18.34 = -19.02 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:18 2006