Locus 3665

Sequence ID 2R_DroMel_CAF1
Location 12,171,969 – 12,172,076
Length 107
Max. P 0.619940
window5963

overview

Window 3

Location 12,171,969 – 12,172,076
Length 107
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 79.07
Mean single sequence MFE -29.80
Consensus MFE -20.33
Energy contribution -19.25
Covariance contribution -1.08
Combinations/Pair 1.54
Mean z-score -1.26
Structure conservation index 0.68
SVM decision value 0.18
SVM RNA-class probability 0.619940
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12171969 107 - 20766785
CUUCAAUUCCCAAUUUCAGGAUGACUCUCAGGAUGGCGAGUUCGCCUGGAGCUCAGCUCUGCAGGGCUACAUCUUGUCGUCCUUCUUCUAUGGCUAUGUCAUCACCC
...................((((((....(((((((((((...(((((((((...)))))...)))).....)))))))))))((......))....)))))).... ( -32.40)
>DroVir_CAF1 41988 107 - 1
CAUUUCUUUACGGUUUUAGGAUAAUGGCGAGGACGGCGAGUUUCCCUGGAGCUCCAGCUUGCAGGGCUAUAUACUGUCAUCCUUCUUCUAUGGCUAUGUGAUCACCC
...........(((.....(((.((((((((((.(((.(((..(((((((((....)))).)))))......)))))).)))))(......))))))...)))))). ( -28.00)
>DroPse_CAF1 31034 107 - 1
AUUCAAUUUAUCAUUUUAGGACGAUUCCCAGGAUGGCGAGUUCGUUUGGAGUUCGAGUCUUCAGGGCUACAUCCUGUCGUCCUUCUUCUACGGCUACGUAAUCACCC
.................(((((((....(((((((.(((..((.....))..)))((((.....)))).)))))))))))))).....((((....))))....... ( -31.40)
>DroGri_CAF1 37971 107 - 1
CUUUGAAUUCCAUUUACAGGACAACGGUGAGGAUGGCGAGUUUGCUUGGAAUUCCAGUUUGCAGGGCUACAUUCUGUCCUCGUUCUUCUAUGGCUAUGUGAUCACCC
........(((.......)))....(((((..(((((..((..(((.((....)))))..))(((((........)))))............)))))....))))). ( -25.70)
>DroEre_CAF1 33677 107 - 1
GCUCAAUUCCCAUUUACAGGAUGACUCCCAGGAUGGCGAGUUCGCCUGGAAUUCAGCUCUGCAGGGCUACAUCCUUUCGUCCUUCUUCUACGGCUACGUGAUCACCC
.................(((((((.....((((((..((((((.....))))))(((((....))))).)))))).))))))).....((((....))))....... ( -29.90)
>DroPer_CAF1 31778 107 - 1
AUUCAAUUUAUCAUUUUAGGACGAUUCCCAGGAUGGCGAGUUCGUUUGGAGUUCGAGUCUUCAGGGCUACAUCCUGUCGUCCUUCUUCUACGGCUACGUAAUCACCC
.................(((((((....(((((((.(((..((.....))..)))((((.....)))).)))))))))))))).....((((....))))....... ( -31.40)
>consensus
CUUCAAUUUACAAUUUCAGGACGACUCCCAGGAUGGCGAGUUCGCCUGGAGUUCAAGUCUGCAGGGCUACAUCCUGUCGUCCUUCUUCUACGGCUACGUGAUCACCC
.................((((((((....((((((..((((((.....)))))).((((.....)))).)))))))))))))).....((((....))))....... (-20.33 = -19.25 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:17 2006