Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,163,052 – 12,163,160 |
Length | 108 |
Max. P | 0.818013 |
Location | 12,163,052 – 12,163,160 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -45.67 |
Consensus MFE | -29.28 |
Energy contribution | -31.45 |
Covariance contribution | 2.17 |
Combinations/Pair | 1.27 |
Mean z-score | -2.68 |
Structure conservation index | 0.64 |
SVM decision value | 0.67 |
SVM RNA-class probability | 0.818013 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12163052 108 - 20766785 GACUUCUCUGAGGUUCCGGUGGAUAGCCAUAGCCGUGGGGAUAUGACCCACUCGAGUCGUAGCUAUCCCUGGAGCUAUAGUUCGAGGAAGUCUGCUGGGACAACGGAC ......((((..(((((((..(((..((......(((((.......)))))(((((..((((((........))))))..)))))))..)))..)))))))..)))). ( -48.00) >DroSec_CAF1 19417 108 - 1 GACUUCUCUGGGGUUCCGGGGGAUAGCCAUAGCCGUGGGGAUAUGACCCACUGGAGUCGUAGCUAUCCCUGGAGCUAUAGUUCGAGGAAGUCUGCUGGGACAGCGGAC ..((((.(((.((((((((((.(((((.((..(((((((.......))))).))....)).))))))))))))))).)))...))))..((((((((...)))))))) ( -50.80) >DroEre_CAF1 24856 108 - 1 GACUUCUCUGGGGUUCCGGGGGAUAGCCAUAGCCGUGGGGAUAUGACCCACUGGAGUCGUAGCUAUCCCUGGAGCUAUAGUUCGAGGAAGUCUGCUGAGACAACGGAC ((((((((((.((((((((((.(((((.((..(((((((.......))))).))....)).))))))))))))))).))).....)))))))..(((......))).. ( -45.20) >DroYak_CAF1 25364 108 - 1 GACUUCUCUGCGGCUCUGGGGGAUAGCCAUAGCCGUGUGGAUAUGACCCACUGGAAUCGUAGCUAUCCCUGGAGCUAUAGUUCGAGGAAGUCUGCUGAGACAACGGAC ((((((((((..((((..(((.(((((.((..(((.((((.......)))))))....)).))))))))..))))..))).....)))))))..(((......))).. ( -42.40) >DroMoj_CAF1 26009 96 - 1 GGCUGCGCUGCGGCU------------CAUGGCCAUGCGGAUAGGAUGAGCUGGAGUCGUAGCUGUCGCGCGAGCUGUAAUUGGAGGAGGUCUGCUGCGAGAGCGGGC (.(((((((((((((------------(.(((((((.(.....).))).))))))))))))))(.((((((((.((.(.......).)).)).)).)))).))))).) ( -41.60) >DroAna_CAF1 19563 108 - 1 GACUCUUCUGCGGCUCUGGCGGAUAACCAUAACCGUGCGGAUAGGAGCCGCUGGAGUCGUAGCUGUCCCUGGAGCUGUAAUUGGAGGAGGUCUGCUGGGAAAGUGGAC ..((((((((((((((..((((....((.((.((....)).))))..))))..)))))))((((........))))......)))))))(((..((.....))..))) ( -46.00) >consensus GACUUCUCUGCGGCUCCGGGGGAUAGCCAUAGCCGUGGGGAUAUGACCCACUGGAGUCGUAGCUAUCCCUGGAGCUAUAGUUCGAGGAAGUCUGCUGGGACAACGGAC ((((((((((.((((((((.(((((((.((..(((((((.......))))).))....)).))))))))))))))).))).....)))))))..(((......))).. (-29.28 = -31.45 + 2.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:15 2006