Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,135,197 – 12,135,293 |
Length | 96 |
Max. P | 0.839105 |
Location | 12,135,197 – 12,135,293 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 69.48 |
Mean single sequence MFE | -17.61 |
Consensus MFE | -4.53 |
Energy contribution | -5.86 |
Covariance contribution | 1.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.33 |
Structure conservation index | 0.26 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.839105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12135197 96 - 20766785 ACGCAAACAGCUAAUACAAAAAGUGCAUCUAAAAUUCAGGGUGGCUAACCAUCGAAACCACCCACCCAGCACUCCAUUCCACUUCACUCGAUUCCA ..((.....))..........(((((((.....))...((((((.............)))))).....)))))....................... ( -13.82) >DroPse_CAF1 23868 79 - 1 CCAUAAGUAGCCCGGGGCCAAAGUGCAUCUAAAAUUCAGGCUGACUGU--AGCGCACCCUCCAUUCCGACGCCUC---------------GGGCCU .........(((((((((....((((..((.......))((((....)--)))))))..((......)).)))))---------------)))).. ( -25.10) >DroSec_CAF1 22354 81 - 1 ACGCAAACAGCUAAUAAAAAAAGUGCAUCUAAAAUUCAGGGUGGCUAACCAUCGAAACCACCCACCCAGCACU---------------CCAUUCCA ..((.....))..........(((((((.....))...((((((.............)))))).....)))))---------------........ ( -13.82) >DroSim_CAF1 5810 86 - 1 ACGCAAACAGCUAAUAAAAAAAGUGCAUCUAAAAUUCAGGGUGGCUAACCAUCGAAACCACCCACCCAGCACUCCACU----------CCAUUCCA ..((.....))..........(((((((.....))...((((((.............)))))).....))))).....----------........ ( -13.82) >DroYak_CAF1 22708 84 - 1 ACGCAAACAGCUAAUACA--AAGUGAAUCUAAAAUUCAGGGUGGCUAACCAUCGAAACCACCCACCCAACACUUCACU----------CCAUUCCU ..((.....)).......--.((((((...........((((((.............)))))).........))))))----------........ ( -13.97) >DroPer_CAF1 22208 79 - 1 CCAUAAGUAGCCCGGGGCCAAAGUGCAUCUAAAAUUCAGGCUGACUGU--AGCGCACCCUCCAUUCCGACGCCUC---------------GGGCCU .........(((((((((....((((..((.......))((((....)--)))))))..((......)).)))))---------------)))).. ( -25.10) >consensus ACGCAAACAGCUAAUAAAAAAAGUGCAUCUAAAAUUCAGGGUGGCUAACCAUCGAAACCACCCACCCAACACUUC_____________CCAUUCCA ......................................((((((.................))))))............................. ( -4.53 = -5.86 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:04 2006