Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,132,163 – 12,132,257 |
Length | 94 |
Max. P | 0.758022 |
Location | 12,132,163 – 12,132,257 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 86.68 |
Mean single sequence MFE | -12.12 |
Consensus MFE | -10.50 |
Energy contribution | -10.36 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.06 |
Mean z-score | -1.75 |
Structure conservation index | 0.87 |
SVM decision value | 0.49 |
SVM RNA-class probability | 0.758022 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12132163 94 + 20766785 --CCAAUCAAUCUAGCCAGAUACAAAGAUACACACUCACACUCCCC-C-U---GCUUCCUGGUUAUGAUCAAUAUUUGGUCAACAAUAAAUUUGAAAUUCA --....((((..(((((((......((...................-)-)---.....)))))))((((((.....)))))).........))))...... ( -12.31) >DroSec_CAF1 19345 90 + 1 --CCAAUCAAUCUAGUCAGAUACAAAAAUACACACUCAC----UCC-C-C---GCUUCCUGGUUACGAUCAAUAUUUGGUCAACAAUAAAUUUGAAAUUCA --.............((((((..................----...-(-(---(.....)))....(((((.....)))))........))))))...... ( -8.20) >DroSim_CAF1 2788 90 + 1 --GCAAUCAAUCUAGCCAGAUACAAAAAUACACACUCAC----UCC-C-C---GCUUCCUGGUUACGAUCAAUAUUUGGUCAACAAUAAAUUUGAAAUUCA --....((((..(((((((....................----...-.-.---.....))))))).(((((.....)))))..........))))...... ( -11.61) >DroEre_CAF1 19438 87 + 1 --CCAAUCAAUCUAGCCAGA----AAGAUACACACUCAC----UCCCC-U---GCUUCCUGGUUACGAUCAAUAUUUGGUCAACAAUAAAUUUGAAAUUCA --....((((..(((((((.----(((............----.....-.---.))).))))))).(((((.....)))))..........))))...... ( -13.81) >DroYak_CAF1 19678 87 + 1 --CCAAUCAAUCUAGCCAGA----AAGAUACACACUCAC----UCCCC-U---GCUUCCUGGUUACGAUCAAUAUUUGGUCAACAAUAAAUUUGAAAUUCA --....((((..(((((((.----(((............----.....-.---.))).))))))).(((((.....)))))..........))))...... ( -13.81) >DroAna_CAF1 17873 91 + 1 AUCGAAUCAAUCUAGCCAGAUA----UAUACA--CACAU----UCCCCAUACGAUUUCCUGGUUACGAUCAAUAUUUGGUCAACAAUCAAUUUGAAUUUCA .((((((.....(((((((...----......--.....----...............))))))).(((((.....)))))........))))))...... ( -12.95) >consensus __CCAAUCAAUCUAGCCAGAUA__AAGAUACACACUCAC____UCC_C_U___GCUUCCUGGUUACGAUCAAUAUUUGGUCAACAAUAAAUUUGAAAUUCA ......((((..(((((((.......................................))))))).(((((.....)))))..........))))...... (-10.50 = -10.36 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:02 2006