Locus 3655

Sequence ID 2R_DroMel_CAF1
Location 12,127,833 – 12,127,932
Length 99
Max. P 0.574831
window5950

overview

Window 0

Location 12,127,833 – 12,127,932
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 84.01
Mean single sequence MFE -22.68
Consensus MFE -15.66
Energy contribution -16.34
Covariance contribution 0.69
Combinations/Pair 1.16
Mean z-score -1.57
Structure conservation index 0.69
SVM decision value 0.08
SVM RNA-class probability 0.574831
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12127833 99 + 20766785
CUCGAACUCCAUAAGUUCAAAAACCGACAAGAUUAUAAAUUACCAGUCACGUGGAGGUUCAGUUUAUAGAAGUUUGCCUGUAGUAAUAUGCAGGUUGUU
...(((((.....))))).......((((...((((((((((((..((....)).)))..)))))))))......(((((((......))))))))))) ( -20.20)
>DroSec_CAF1 15038 99 + 1
CUUGAACUCCAUAAGUUCAAAAAACGACAAGAUUAUAAAAUACCAGUCACGUGUAGGUUCAGUUUAUAGAAGUUUGCCUGUAGUAAUAUGCAGGCUGUU
.(((((((.....))))))).....((((...(((((((..(((...........)))....)))))))......(((((((......))))))))))) ( -22.60)
>DroEre_CAF1 15151 93 + 1
CUUGAACCCCAUGAUUUCAGAAAUGGACAACAUCAUAA------AGUCACGUGGAAGUUCAAUUUAUAGAAGUUUGCCUGUAGUAAUAUGCAGGCUGUU
.((((((.(((((....((....))(((..........------.))).)))))..)))))).............(((((((......))))))).... ( -25.10)
>DroYak_CAF1 15292 99 + 1
CUUGAAUUCCAUGAUUUCAGAAUCGAAUAAAAGUAUGAAUAAACAGUCACGUGGAGGUUCAGUUUAUAGAAGUUCGCCUGUAGUAAUAUGCAGGCUUUU
.((((((((((((..(((......)))........(((........))))))))).)))))).............(((((((......))))))).... ( -22.80)
>consensus
CUUGAACUCCAUAAGUUCAAAAACCGACAAGAUUAUAAAUUACCAGUCACGUGGAGGUUCAGUUUAUAGAAGUUUGCCUGUAGUAAUAUGCAGGCUGUU
.((((((((((((....................................)))))).)))))).............(((((((......))))))).... (-15.66 = -16.34 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:01 2006