Locus 3654

Sequence ID 2R_DroMel_CAF1
Location 12,120,314 – 12,120,404
Length 90
Max. P 0.941279
window5949

overview

Window 9

Location 12,120,314 – 12,120,404
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 84.44
Mean single sequence MFE -19.52
Consensus MFE -14.51
Energy contribution -14.70
Covariance contribution 0.19
Combinations/Pair 1.15
Mean z-score -2.31
Structure conservation index 0.74
SVM decision value 1.32
SVM RNA-class probability 0.941279
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12120314 90 + 20766785
CCUAGAUGUUGGUAAAAAGCCAACAUCAUAAAAUGGUAAAUACCGAAACCAGAGUAUUGGGCCUAAGCAGCCGAAAACUCCCGAGGCAAA
(((.(((((((((.....)))))))))......((((....))))......((((.((.(((.......))).)).))))...))).... ( -26.90)
>DroSec_CAF1 7490 90 + 1
CCUAGAUGUUGGUAAAAAGACAACAUCAUAAAAUGGUAAAUACUGAAACCAGAGUAUUGGGCCUAAGCCGUCGAAAACUCCACAGCCAAA
....(((((((.........)))))))......((((.((((((........)))))).(((....)))...............)))).. ( -20.10)
>DroEre_CAF1 7568 90 + 1
CCUAGAUGUUCGUAAAAAGCCAACAUCGUAAAAUGGUAAAUAGUGAAACCAGAGUAUUGGGCCUAAGCAGCAGAAAAGUCCACAGCCAAA
....((((((.((.....)).))))))......((((.....(((...((((....))))((....))............))).)))).. ( -14.30)
>DroYak_CAF1 7665 77 + 1
CCUAGAUGUUGUUAAAAAGCCAGCAUCAUAAAAUGGUAAAUACUGAAACCAGAGUAUUAGGCCUAGGCAGCAGAAAA-------------
(((((((((((.........))))))).......(((.((((((........))))))..)))))))..........------------- ( -16.80)
>consensus
CCUAGAUGUUGGUAAAAAGCCAACAUCAUAAAAUGGUAAAUACUGAAACCAGAGUAUUGGGCCUAAGCAGCAGAAAACUCCACAGCCAAA
(((((((((((((.....)))))))))(((...((((..........))))...)))))))............................. (-14.51 = -14.70 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:01:00 2006