| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,115,504 – 12,115,598 |
| Length | 94 |
| Max. P | 0.694654 |
| Location | 12,115,504 – 12,115,598 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 68.42 |
| Mean single sequence MFE | -23.27 |
| Consensus MFE | -11.03 |
| Energy contribution | -11.03 |
| Covariance contribution | 0.01 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.694654 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12115504 94 - 20766785 GUUGGAAUGUA-GUGCUGGGAUAAGUAAAGGUACAUUCUAUUACGAG--UAAUAGAAGUUAUCUAAA-----CU-AUUCCAUAAAUAUGGGAACCCCUAC-UUU ........(((-(....(((...(((..(((((..((((((((....--))))))))..)))))..)-----))-.((((((....)))))).)))))))-... ( -23.60) >DroSec_CAF1 2712 93 - 1 GUUGGAAUGUAAAUGCUGGGAUAAGUACAGGCAAAUUCCAUUACGAGUUUAAUAGGAAUUAUCCAAA-----AU-AUUCCAGAAAUAUGGGAACCCCA-C---- .(((((((((...((((......))))..((..((((((((((......)))).))))))..))...-----))-))))))).....((((...))))-.---- ( -22.10) >DroYak_CAF1 2751 95 - 1 ---GGUGUUUAAAUG---GGAUAGGCACAGGUUACUUCUAUUACGAUCUUAGUAGGAGUGUGCUAGACACUAAUAUUUCCAGAAAGAUGGGAACCCC---UUUU ---...........(---((...(((((.....((((((((((......)))))))))))))))...........((((((......)))))).)))---.... ( -24.10) >consensus GUUGGAAUGUAAAUGCUGGGAUAAGUACAGGUAAAUUCUAUUACGAG_UUAAUAGGAGUUAUCUAAA_____AU_AUUCCAGAAAUAUGGGAACCCC__C_UUU .................(((.........((....((((((((......)))))))).....))............(((((......)))))..)))....... (-11.03 = -11.03 + 0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:59 2006