| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,111,285 – 12,111,383 |
| Length | 98 |
| Max. P | 0.676561 |
| Location | 12,111,285 – 12,111,383 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 80.10 |
| Mean single sequence MFE | -31.75 |
| Consensus MFE | -19.89 |
| Energy contribution | -20.42 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.63 |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.676561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12111285 98 - 20766785 UAUACGUUCACCAAGAAUCUGUCGGAGAAUUUGCUGAUGGCCGAGAUGUCGGGACUGCCAGCAGCCAUAGUUAGGCCAUCGAUUGGUGAGAUUCCAUU---------- ......((((((((...(((.....)))......((((((((..(((....((.(((....)))))...))).)))))))).))))))))........---------- ( -31.30) >DroVir_CAF1 22930 102 - 1 UAUACGUUUACCAAGAAUCUGUCGGAGAAUCUGCUCAUGGCGGAGAUGUCCGGUCUGCCGGCAGCCAUAGUUAGGCCAUCUAUAGGUGAGUCC--AGCUAC----CAA ..................((((((((.(.(((((.....)))))..).)))((....)))))))...(((((.(((((((....)))).))).--))))).----... ( -29.40) >DroGri_CAF1 28988 102 - 1 UAUACCUUCACCAAGAAUCUCUCCGAGAAUCUGCUCAUGGCCGAGAUGUCCGGUCUGCCGGCAGCCAUCGUAAGGCCAUCGAUUGGUAAGUUU--AUCUAU----AUA .....(((.(((((((.((((...)))).)))..((((((((..((((.((((....))))....))))....)))))).)).)))))))...--......----... ( -30.60) >DroYak_CAF1 7578 103 - 1 UAUACGUUCACCAAGAAUCUGUCCGAGAAUCUGCUGAUGGCCGAGAUGUCGGGACUGCCAGCAGCCAUAGUUAGGCCAUCAAUUGGUAAGAUUUUAUUAGGA----A- .....((((.....))))...(((.(((((((((((((((((..(((....((.(((....)))))...))).)))))))....))).)))))))....)))----.- ( -30.20) >DroMoj_CAF1 26194 102 - 1 UACACGUUCACCAAGAAUCUGUCCGAGAAUCUGCUCAUGGCAGAGAUGGCCGGUCUGCCGGCAGCCAUAGUUAGGCCAUCCAUAGGUGAGUCG--AAGUAU----AAA ....((((((((.....((((((.(((......)))..))))))(((((((((....))))).(((.......)))))))....)))))).))--......----... ( -37.60) >DroAna_CAF1 8013 103 - 1 UAUACGUUUACCAAGAACCUCUCGGAGAACCUUCUGAUGGCCGAGAUGUCCGGAUUGCCGGCAGCCAUAGUCAGGCCAUCAAUUGGUAAGUUU----UGGAACCAAA- ..........((((((.((....))...(((...((((((((((.(((.((((....))))....)))..)).))))))))...)))...)))----))).......- ( -31.40) >consensus UAUACGUUCACCAAGAAUCUGUCCGAGAAUCUGCUCAUGGCCGAGAUGUCCGGACUGCCGGCAGCCAUAGUUAGGCCAUCAAUUGGUAAGUUU__AUUUAU____AA_ ......((((((.(((.(((.....))).)))....((((((...((....((.(((....)))))...))..)))))).....)))))).................. (-19.89 = -20.42 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:57 2006