Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,108,540 – 12,108,640 |
Length | 100 |
Max. P | 0.511495 |
Location | 12,108,540 – 12,108,640 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 71.13 |
Mean single sequence MFE | -12.20 |
Consensus MFE | -1.08 |
Energy contribution | -1.64 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.25 |
Mean z-score | -1.53 |
Structure conservation index | 0.09 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511495 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12108540 100 - 20766785 UUAACUAUUUUCACAUAUGUAGACUUU---AUCAUUCAUAUAAGCCAGAAGUCCAGU---GGAUCAACAUAU-CUAUU--CCAACUUUCCAAAACUUGAACUUUAAACU .........((((.(((((..((....---.))...)))))......(((((..(((---((((......))-)))))--...)))))........))))......... ( -8.50) >DroSec_CAF1 4507 90 - 1 ------AUUUUCACAUUUGGUGACAUU---AUCAUCUAUAUAAGUCAAAAUUCCAGU---GGAUCAACACA-----UU--CCAACUUUCCCAAACUUGAACUUUAAACU ------...((((..(((((((((.((---((.......))))))))........((---(......))).-----..--.........)))))..))))......... ( -13.00) >DroSim_CAF1 4017 90 - 1 ------AUUUUCACAUUUGGUGACUUU---AUCAUCCAUAUAAGCCAAAAUUCCAGU---GGACCAACAUA-----UU--CCAACUUUCCCAAACUUGAACUUUAAACU ------...((((..((((((((....---.)))(((((................))---)))........-----..--.........)))))..))))......... ( -9.19) >DroEre_CAF1 4635 98 - 1 ------AUUUUAACUUUUAUAGACAAA---AUCAUCCAUAUAAGGCUGAAGCUCAGUAAUGCACUCUAACAUUAAAUG--CCAACUUCCCCAAACUUGAACUUCAAACU ------.......(((.(((.((....---....)).))).)))..(((((.(((((((((........)))))....--...............)))).))))).... ( -7.70) >DroYak_CAF1 4060 103 - 1 ------AUUAUGUGUUUUGGAACCAAAAAUAUCUUCCAUAUAAGCCUGAAGUCUAGUAAUGGAUUAAUCCAUUAAAUGGAUUAAGUUCCCCAAACUUGAACUUCAAACU ------.((((((((((((....)))))........)))))))...(((((((.(((...((((((((((((...)))))))))..)))....))).).)))))).... ( -22.60) >consensus ______AUUUUCACAUUUGGAGACAUU___AUCAUCCAUAUAAGCCAGAAGUCCAGU___GGAUCAACACAU___AUU__CCAACUUUCCCAAACUUGAACUUUAAACU ...............................................((((((.(((...(((........................)))...))).).)))))..... ( -1.08 = -1.64 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:56 2006