Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,103,946 – 12,104,065 |
Length | 119 |
Max. P | 0.683465 |
Location | 12,103,946 – 12,104,065 |
---|---|
Length | 119 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 89.97 |
Mean single sequence MFE | -47.71 |
Consensus MFE | -36.69 |
Energy contribution | -38.80 |
Covariance contribution | 2.11 |
Combinations/Pair | 1.02 |
Mean z-score | -2.41 |
Structure conservation index | 0.77 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12103946 119 + 20766785 UCGGCAAGCGUUUGUGUGUCCGCAAAUGGGUCAA-GUGCGGAGAAAAGCCCUCGCUUUUCCUGCACACUUCGGCCAAUUGAUGAAGUUUUGCAUGCACUGGACCAGCUGGUCGUUUGCUG .((((((((......((((..(((((........-((((((.(((((((....)))))))))))))((((((..(....).)))))))))))..))))..((((....)))))))))))) ( -47.40) >DroSim_CAF1 8139 119 + 1 UCGGCAAGCGUUUGUGUGUCCACAAAUGGGUCAA-GUGCGGAGAAAAGCCCUCGCUUUUCCUGCACACUUCGGCCAAUUGAUGGAGUUUUGCAUGCACUGGACCAGCUGGUCGUUUGCUA ..(((((((((.((((..(((((((.(((.....-((((((.(((((((....))))))))))))).(....)))).))).))))....)))).))....((((....))))))))))). ( -47.10) >DroYak_CAF1 8679 120 + 1 UGGCAAGGCGUUUGUGUGUCCGCAAGUGGGUCAAGGUGCGGAGAAAAGCCCUCGCUUUUCCUGCCAACUUUGGCCAAUUGGUGGUGUUUGGGAUGCACUGGACCAGCUGGUCGUGCGCUG ......(((((..((((((((.((((..(((((((((((((.(((((((....)))))))))))..)))))))))...........))))))))))))..((((....))))..))))). ( -48.62) >consensus UCGGCAAGCGUUUGUGUGUCCGCAAAUGGGUCAA_GUGCGGAGAAAAGCCCUCGCUUUUCCUGCACACUUCGGCCAAUUGAUGGAGUUUUGCAUGCACUGGACCAGCUGGUCGUUUGCUG ..(((((((....((((((((((((...((((...((((((.(((((((....))))))))))))).....))))..))).)))........))))))..((((....))))))))))). (-36.69 = -38.80 + 2.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:55 2006