Locus 3649

Sequence ID 2R_DroMel_CAF1
Location 12,103,197 – 12,103,305
Length 108
Max. P 0.546621
window5944

overview

Window 4

Location 12,103,197 – 12,103,305
Length 108
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 80.99
Mean single sequence MFE -38.22
Consensus MFE -27.54
Energy contribution -27.47
Covariance contribution -0.07
Combinations/Pair 1.48
Mean z-score -1.22
Structure conservation index 0.72
SVM decision value 0.03
SVM RNA-class probability 0.546621
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12103197 108 - 20766785
UUUUCGUCCAGGGACUGGUGCUCUUCGCUUUGAGUGCCAUCCAUCGACUAGGUGGAUUCUUUUGCGGCGGUUCUUGGCCAACCGAGGAAUUUGAUACGCUCAACAUGA
((((((.(((((((((((..(((........)))..))(((((((.....)))))))...........))))))))).....))))))..((((.....))))..... ( -34.00)
>DroSec_CAF1 7445 108 - 1
UUUUCGUCCAGGGACUGGUGCUCUUCGCUUUGAGUGCCAUCCACCGGCUAGGUGGAUUCUUCUGCGGCGGUUCUUGGCCAAGUGAGGAAUUUGAGACGCUCGACAUGA
.....(((.((.(..(((..(((........)))..)))((((((.....))))))((((((...(((.(....).)))....)))))).......).)).))).... ( -37.60)
>DroSim_CAF1 7395 108 - 1
UUUUCGUCCAGGGACUGGUGCUCUUCGCUUUGAGUGCCAUUCACCGACUGGGCGGAUUCUUCUGCGGUGGUUCUUGGCCAAGCGAGGAAUUUGAGACGCUCGACAUGA
..(((((((((.((.(((..(((........)))..))).)).....)))))))))((((((.((..((((.....)))).)))))))).(((((...)))))..... ( -41.30)
>DroEre_CAF1 7797 108 - 1
UUUUUGUCCAGGGGCUGGUGCUCUUCGCUUUGAGCGCCAUCCACCGCCUGGGUGGAUUCUUCUGCGGCGGUUCCUGGCCAAGCGAUGAAUUCGAGACGCUCGACAUGA
..((((.(((((((.((((((((........)))))))).))((((((...(..((....))..))))))).))))).))))........(((((...)))))..... ( -45.90)
>DroYak_CAF1 7922 108 - 1
UUUUUGUCCAGGGACUGGUGCUCUUCGCGUUGAGUGCCAUCCACCGACUAGGUGGCUUCUUCUGCGGCGGCUCCUGGCCAAGCGAUGAGUUCGAGACGCUCGACAUGA
....((((.((.(.((.(.((((.((((.......(((...((((.....))))((.......)))))(((.....)))..)))).)))).).)).).)).))))... ( -40.00)
>DroAna_CAF1 3628 108 - 1
UUUUUGUCCAGGGUUUGGUCUUAUUCGCCCUGAGUGCUCUACAUAAUUUUUGGGAGCUAUUUCGCGACGGGACCUGCGAUGCGGAUGACUUCGAGAACCUUAACAAGA
.((((((..(((((((((((((..((((...(((((((((.((.......))))))).)))).)))).)))))).......((((....)))).))))))).)))))) ( -30.50)
>consensus
UUUUCGUCCAGGGACUGGUGCUCUUCGCUUUGAGUGCCAUCCACCGACUAGGUGGAUUCUUCUGCGGCGGUUCCUGGCCAAGCGAGGAAUUCGAGACGCUCGACAUGA
(..((((((((((((((((((((........)))))))(((((((.....)))))))...........)))))))))....))))..)..(((((...)))))..... (-27.54 = -27.47 +  -0.07)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:54 2006