Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,078,042 – 12,078,145 |
Length | 103 |
Max. P | 0.548499 |
Location | 12,078,042 – 12,078,145 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.99 |
Mean single sequence MFE | -19.73 |
Consensus MFE | -15.60 |
Energy contribution | -15.63 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.06 |
Mean z-score | -1.56 |
Structure conservation index | 0.79 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.548499 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12078042 103 - 20766785 UCCUCAUCG---CCGACGCCAUCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGC--CUGCUU------------ACCCUC .........---..............................(((((((((.....((((((..(((....)))..))))))...)))))))))--......------------...... ( -16.50) >DroVir_CAF1 109142 97 - 1 UCCUCGUUG---GCAACGCCAUCAUUCAAAACAAUUUCA-AAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGC--CUCCUU------------U----- .....(.((---((...)))).)................-..(((((((((.....((((((..(((....)))..))))))...)))))))))--......------------.----- ( -20.60) >DroGri_CAF1 95318 102 - 1 UCUUUGUUG---GCAACGCCAUCAUUCAAAACAAUUUCA-AAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGC--CUCCUU------------UACCUC ....((.((---((...)))).))...............-..(((((((((.....((((((..(((....)))..))))))...)))))))))--......------------...... ( -21.00) >DroWil_CAF1 105637 119 - 1 UCCACAUCCAUUCAGCCAUCAUCAUUCAAAACAAUUUCA-AAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGCUCCUGCUUCAGUACUGAAUAAGCCUC .........((((((........................-.((((((((((.....((((((..(((....)))..))))))...))))))))))..(((....)))))))))....... ( -22.60) >DroMoj_CAF1 113611 102 - 1 UCUUCGCUG---GCAACGCCAUCAUUCAAAACAAUUUCA-AAGCUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGG--CUCCUU------------UACCUC .....((((---((...))))..................-...((((((((.....((((((..(((....)))..))))))...)))))))))--).....------------...... ( -20.90) >DroAna_CAF1 69211 103 - 1 UCCUCGUCG---UCAACGCCAUCAUUCAAAACAAUUCCAAAAGUUAAGUGCUUCUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGC--CUUCUU------------ACCCCC .....(.((---....)).)......................(((((((((.....((((((..(((....)))..))))))...)))))))))--......------------...... ( -16.80) >consensus UCCUCGUCG___GCAACGCCAUCAUUCAAAACAAUUUCA_AAGUUAAGUGCUUUUGUAUGACAACUAAAUCUGGCAGUCAUAAUCGCAUUUGGC__CUCCUU____________AACCUC ..........................................(((((((((.....((((((..(((....)))..))))))...))))))))).......................... (-15.60 = -15.63 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:38 2006