Locus 3641

Sequence ID 2R_DroMel_CAF1
Location 12,075,312 – 12,075,432
Length 120
Max. P 0.531082
window5927

overview

Window 7

Location 12,075,312 – 12,075,432
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.94
Mean single sequence MFE -38.67
Consensus MFE -21.72
Energy contribution -20.92
Covariance contribution -0.80
Combinations/Pair 1.40
Mean z-score -1.60
Structure conservation index 0.56
SVM decision value -0.00
SVM RNA-class probability 0.531082
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12075312 120 - 20766785
UUCUUCUAAUCAGAGGGCUCACACUGCCGGGAUCUUUUCUGGGCAUUCAGUAUUAUCUUACGCCCAACUUUAGUGCCAUCUAUAAGGCUGAGGUCUGGGUGGAUGCUGCCACCCAGGUGU
..((((........((((......((((.(((.....))).))))....(((......))))))).........(((........))).))))(((((((((......)))))))))... ( -42.20)
>DroVir_CAF1 105012 120 - 1
UUUUGCUAAUACGCGGCAUCACCUUGCCGGGCUCUGCCAUGGGCAUACAAUACUAUUUGAGUCCAAAAUUUGAUGCCAUAUUCAAGGCUGAGGUGUGGGUCGAUGCGGCCACUCAGGUGU
..........(((((((((((..((...((((((((((...)))).............))))))..))..)))))))..........(((((.....(((((...))))).))))))))) ( -37.71)
>DroGri_CAF1 92016 120 - 1
UACUGCUGAUACGCGGCAUCACCUUGCCAGGCUCUGCGAUGGGUAUACAAUAUUACUUGAGUCCAAACUUCGAUGCCAUCUACAAGGCGGAAGUGUGGGUCGAUGCCGCCACACAGGUAU
..(((.((....((((((((.((((((........)))).))................((.((((.(((((..((((........))))))))).))))))))))))))..))))).... ( -38.90)
>DroWil_CAF1 102529 120 - 1
UUCUACUUAUACGUGGUCUAACCUUACCAGGAUCAUUUAUGGGUAUACAAUAUUAUUUGACACCCAAUUUCAGUGCCAUUUACAAGGCCGAAGUAUGGGUAGAUGCUGCCACUCAAGUGU
.((((((((((((((((((..........)))))))...(((((...(((......)))..)))))..(((.(.(((........))))))))))))))))))......(((....))). ( -31.20)
>DroMoj_CAF1 108721 120 - 1
UACUGCUGAUACGCGGCAUCACCUUGCCUGGCUCUGCCAUGGGCAUUCAGUAUUAUCUGAGCCCCAACUUUGAUGCCAUCUACAAGGCGGAGGUGUGGGUCGAUGCUGCCACCCAGGUGU
............((((((((..((..(..(.(((((((..((((..((((......)))))))).......(((...))).....))))))).))..))..))))))))(((....))). ( -43.40)
>DroAna_CAF1 66610 120 - 1
UUCUCCUGAUAAGGGGUCUCACAUUGCCAGGAUCCUUCCUGGGUAUACAGUAUUAUCUCACGCCCAAUUUCAGCGCCAUUUAUAAGGCAGAGGUAUGGGUGGAUGCUGCCACUCAAGUGU
..(((((....)))))...(((....((((((....)))))).....(((((((......(((((((((((...(((........))).))))).)))))))))))))........))). ( -38.60)
>consensus
UUCUGCUGAUACGCGGCAUCACCUUGCCAGGAUCUGCCAUGGGCAUACAAUAUUAUCUGACGCCCAACUUCAAUGCCAUCUACAAGGCGGAGGUGUGGGUCGAUGCUGCCACUCAGGUGU
............(((((.((....((((.(((...)))...))))...............(.(((((((((...(((........))).))))).)))).))).)))))(((....))). (-21.72 = -20.92 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:37 2006