Locus 364

Sequence ID 2R_DroMel_CAF1
Location 2,348,326 – 2,348,426
Length 100
Max. P 0.642392
window716

overview

Window 6

Location 2,348,326 – 2,348,426
Length 100
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.50
Mean single sequence MFE -33.57
Consensus MFE -22.88
Energy contribution -21.63
Covariance contribution -1.25
Combinations/Pair 1.41
Mean z-score -1.33
Structure conservation index 0.68
SVM decision value 0.23
SVM RNA-class probability 0.642392
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2348326 100 + 20766785
--------------------CUACUCGUUCUAGGCAAACUGUAUAAAAUUGGUGACAUUCUGCCGCAGGACACGGGCAACUGCCUGCAGUGCAUUUGCACGGAUGCCGUGACUCCCGACG
--------------------......(((...((((.............((....)).....(((((((...(((....)))))))).((((....)))))).))))..)))........ ( -30.40)
>DroVir_CAF1 4371 100 + 1
--------------------AUUGUUGUCGCAGGCAAAUUGUAUAAAAUUGGUGAAAUUCUGCCACAGGACACCGGCAACUGUUUGCAGUGCAUUUGCACGGAUGCGGUGACACCUGAUG
--------------------..(((..(((((.((((((...........((((...(((((...)))))))))(....).)))))).((((....))))...)))))..)))....... ( -31.50)
>DroGri_CAF1 5526 100 + 1
--------------------UCUGCCAUUGCAGGUAAAUUGUAUAAAAUUGGCGAAGUUCUGCCACAGGACACCGGUAACUGUUUGCAGUGCAUCUGCACGGAUGCUGUGACACCUGACG
--------------------(((((....)))))...............(((((......)))))((((.(((.((((.((((..((((.....)))))))).)))))))...))))... ( -28.60)
>DroEre_CAF1 3630 100 + 1
--------------------GUUCUCGUUGCAGGCAAACUGUACAAAAUCGGAGACAUUCUGCCGCAGGACACGGGCAACUGCCUGCAGUGCAUCUGCACGGAUGCCGUGACUCCGGACG
--------------------((((..((.((((.....))))))......((((.(((....(((((((...(((....)))))))).((((....)))))).....))).)))))))). ( -37.50)
>DroMoj_CAF1 5580 100 + 1
--------------------AUUGCUGUUGCAGGCAAAUUGUAUAAAAUUGGUGAAAUUCUGCCACAGGACACUGGCAACUGUUUGCAGUGCAUCUGCACGGAUGCGGUGACACCUGAUG
--------------------(((((.(((((.((((((((.(((.......))).)))).)))).(((....)))))))).....)))))((((((....))))))(....)........ ( -29.90)
>DroAna_CAF1 11564 120 + 1
UGUUGUUGGUGUUUUGUGUUCUGUUUGUUGCAGGGAAACUGUAUAAAAUUGGCGACAUUCUGCCACAGGAUACGGGCAACUGUCUGCAGUGCAUCUGCACAGAUGCCGUGACCCCGGACG
.((((((.((((((((((....(..((((((.((....))...........))))))..)...)))))))))).)))))).(((((..((((((((....))))))....))..))))). ( -43.50)
>consensus
____________________AUUGUCGUUGCAGGCAAACUGUAUAAAAUUGGUGAAAUUCUGCCACAGGACACGGGCAACUGUCUGCAGUGCAUCUGCACGGAUGCCGUGACACCUGACG
............................(((((.....)))))......(((((......)))))..((.(((((.((.(((..(((((.....)))))))).)))))))...))..... (-22.88 = -21.63 +  -1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:28 2006