Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,053,660 – 12,053,753 |
Length | 93 |
Max. P | 0.691736 |
Location | 12,053,660 – 12,053,753 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 87.97 |
Mean single sequence MFE | -27.37 |
Consensus MFE | -17.19 |
Energy contribution | -17.19 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -3.25 |
Structure conservation index | 0.63 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691736 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12053660 93 + 20766785 AGGGACUUUUCCCCCUGCAUACACAUACAUAUUUAUAUGCAUUUGGCUUUGUCUGUAUU------CGUUUGUUUGUAUGUGUGUGCGUUAUCCUGCACU ((((........))))(((((((((((((.((..(((((((...(((...)))))))).------.))..)).)))))))))))))............. ( -27.40) >DroSec_CAF1 54519 93 + 1 AGGGACCUUACCCCCUGCAUACACAUACAUA----CAUGCAUUUGGCUUUGUCUGUAUUGCUGUCCGUUUGUUUGU--GUGUGUGCGUAUUCCUGCACU ((((........))))((((((.((((((((----((.(((..((((...((.......)).).)))..))).)))--))))))).)))....)))... ( -28.70) >DroSim_CAF1 55110 93 + 1 AGGGACCUUACCCCCUGCAUACACAUACAUA----CAUGCAUUUGGCUUUGUCUGUAUUGCUGUUCGUUUGUUUGU--GUGUGUGCGUUUUCCUGCACU ((((........))))(((((((((((...(----((.((...((((..((....))..))))...)).))).)))--))))))))............. ( -26.00) >consensus AGGGACCUUACCCCCUGCAUACACAUACAUA____CAUGCAUUUGGCUUUGUCUGUAUUGCUGU_CGUUUGUUUGU__GUGUGUGCGUUUUCCUGCACU ((((........))))(((((((((((((.........((.....))......))))).......((......))...))))))))............. (-17.19 = -17.19 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:28 2006