Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,044,002 – 12,044,121 |
Length | 119 |
Max. P | 0.632246 |
Location | 12,044,002 – 12,044,121 |
---|---|
Length | 119 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.40 |
Mean single sequence MFE | -26.33 |
Consensus MFE | -17.16 |
Energy contribution | -17.08 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.31 |
Mean z-score | -1.68 |
Structure conservation index | 0.65 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.632246 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12044002 119 - 20766785 UGCUUAUUUCAUACUUACUGUCCAACCACUUGGAGUCGUAUUUCAGAGUCCUCUUGAAUUUAUAUUCCAAACGUUUAGCCGAAGUAUUAUACAGAUCAGUGCGGAAAAUAACCGUAUCC ..........((((((.(.((..(((...(((((((.(((.((((((....)).))))..))))))))))..)))..)).)))))))...........((((((.......)))))).. ( -21.30) >DroVir_CAF1 53646 109 - 1 ----------UUACUUACUGUCCAACCACUUGGAAUCAUAUUUGAGCGUGCGCUUGAAUUUGUAUUCCAAGCGCUUUGCCGACGUAUUAUACAAAUCCGUUCGAAAGAUCACAGUAUCC ----------.....((((((.....(.((((((((((.(((..(((....)))..))).)).)))))))).)((((.(.((((.(((.....))).)))).)))))...))))))... ( -29.80) >DroGri_CAF1 53620 119 - 1 UUUUUUUUUUUUACUUACUGUCCAACCACUUGGAAUCAUAUUUGAGCGUGCGCUUGAAUUUGUAUUCCAAGCGCUUUGCUGACGUAUUAUAUAAAUCCGUUCGAAAGAUCACAGUAUCC ...............((((((.....(.((((((((((.(((..(((....)))..))).)).)))))))).)((((.(.((((.(((.....))).)))).)))))...))))))... ( -29.80) >DroWil_CAF1 59328 119 - 1 UUCUUUUCUAAUACUUACUGUCCAACCAUUUGGAAUCAUAUUUCAGUGUUCUCUUGAAUUUGUAUUCCAAACGUUUUGCUGAUGUAUUAUAUAAAUCGGUACGGAAAAUUACGGUAUCG ...............((((((....((.((((((((((.((((.((......)).)))).)).)))))))).....(((((((...........))))))).))......))))))... ( -22.40) >DroMoj_CAF1 65882 119 - 1 UCUCUUCUCGUUACUUACUGUCCAACCACUUGGAAUCAUAUUUGAGCGUACGCUUGAAUUUGUAUUCCAGGCGCUUUGCCGACGUAUUAUACAAAUCCGUUCGAAAGAUCACAGUAUCA ...............((((((.....(.((((((((((.(((..(((....)))..))).)).)))))))).)((((.(.((((.(((.....))).)))).)))))...))))))... ( -29.50) >DroAna_CAF1 40011 119 - 1 UAAUUGUUUCAUACUUACUGUCCAACCACUUGGAGUCGUACUUGAGAGUCCUCUUGAAUUUAUAUUCCAAGCGUUUAGCCGAAGUGUUAUAGAGAUCAGUACGGAAGAUGACCGUGUCC ..((((((((((((((.(.((..(((..((((((((.(((.(..(((....)))..)...))))))))))).)))..)).)))))))....)))).))))((((.......)))).... ( -25.20) >consensus UUCUUUUUUCAUACUUACUGUCCAACCACUUGGAAUCAUAUUUGAGCGUCCGCUUGAAUUUGUAUUCCAAGCGCUUUGCCGACGUAUUAUACAAAUCCGUUCGAAAGAUCACAGUAUCC ...............((((((.......((((((((((.((((((((....)))))))).)).))))))))((......)).............................))))))... (-17.16 = -17.08 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:27 2006