Locus 3635

Sequence ID 2R_DroMel_CAF1
Location 12,036,440 – 12,036,541
Length 101
Max. P 0.767738
window5916

overview

Window 6

Location 12,036,440 – 12,036,541
Length 101
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 84.35
Mean single sequence MFE -25.30
Consensus MFE -16.10
Energy contribution -16.90
Covariance contribution 0.80
Combinations/Pair 1.18
Mean z-score -2.24
Structure conservation index 0.64
SVM decision value 0.52
SVM RNA-class probability 0.767738
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12036440 101 + 20766785
CCCACAUUUUUUCGCUCAUUAAACUUCAGUUGUAUAU------GUA--UAUAUCCUGUACAAGGGUAUAAAAAGUGUGGGUUUUAAAACUAUUUGAAGCGUUUAUGUGG
.((((((((((..((......(((....)))......------)).--((((((((.....))))))))))))))))))((((((((....)))))))).......... ( -24.80)
>DroSec_CAF1 37645 108 + 1
CCCGCAUUUUUUCGCUCAUUAAACUUCA-UUGUAUAUAUAUAUGUAUAUAUACCCUGUACAAGGGUAUAAAAAGUGUGGGUUUUAAAACUAUUUGAAGCGUUUAUGUGG
.((((((((((.................-.(((((((....)))))))((((((((.....))))))))))))))))))((((((((....)))))))).......... ( -28.80)
>DroSim_CAF1 38152 96 + 1
UCCGCAUUUUUUCGCUCAUUAAACUUCA-UUGUAUAUAU------------AUCCUGUACAAGGGUAUAAAAAGUGUGGGUUUUAAAACUAUUUGAAGCGUUUAUGUGG
.((((((.....((((((..((((((((-((.....(((------------(((((.....))))))))...)))).))))))..........)).))))...)))))) ( -23.40)
>DroEre_CAF1 37479 102 + 1
CCCACUUUUAUACGCUCAUUAAACUUCAGUUGAAUAU------GAAAAUGUAGCCUGUGCAAGGGUAUAAAAAGUGGGGGC-UUAAAACUAUUUGGAGCGUUUAUGUGG
.((((...((.((((((.......((((........)------)))..((((.(((.....))).))))..((((((....-......)))))).)))))).)).)))) ( -25.10)
>DroYak_CAF1 37598 100 + 1
UCCACAUUUAUACGCUCAUUAAACUUCAGUUGCAUAU------GAGAAU--AUCCUGUACAAGGGUAUAAAACGAGGGAGC-UUAAAACUAUUUGAAGCGUUUAUGUGG
.((((((....(((((((.........((((.(....------....((--(((((.....)))))))........).)))-)..........)).)))))..)))))) ( -24.40)
>consensus
CCCACAUUUUUUCGCUCAUUAAACUUCAGUUGUAUAU______GAA_AU_UAUCCUGUACAAGGGUAUAAAAAGUGUGGGUUUUAAAACUAUUUGAAGCGUUUAUGUGG
.((((((.....((((((..............................((((((((.....)))))))).........((........))...)).))))...)))))) (-16.10 = -16.90 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:26 2006