| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 12,032,018 – 12,032,127 |
| Length | 109 |
| Max. P | 0.756145 |
| Location | 12,032,018 – 12,032,127 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 82.55 |
| Mean single sequence MFE | -47.35 |
| Consensus MFE | -34.17 |
| Energy contribution | -35.95 |
| Covariance contribution | 1.78 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756145 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12032018 109 - 20766785 GUGUUCUCGUAGUCCGCAGCUGUCUCGCUCACACUACUGCAGAGGAGUAGCAGGAGUGCGAGGAGCGGCGAUAGCUGUAGAAGCGACAUUGCGAGGGCGGUGCGAGCGA .(((((((((..((..((((((((((((((.((((.((((.........)))).))))....)))))).))))))))..)).))))((((((....)))))).))))). ( -49.00) >DroPse_CAF1 84850 92 - 1 GUGUUCUCGUAGUCGGCGGCCGUCUCGCUCACACUGCUGGUCAGCAG------AGCCGCCAGGAGUGGGGUCAGCAGCAGGAGUGGCAGCAUG---GCUCU-------- ........(.(((((((.((((.(((.((....((((((..(..((.------..((....))..)).)..)))))).))))))))).)).))---)))).-------- ( -33.00) >DroSec_CAF1 33293 109 - 1 GUGUUUUCGUAGUCGGCAGCCGUCUCGCUCACACUGCUGCAGAGGAGUAGCAGGAGUGCGAGGAGUGGCGUUAGCUGUAGGAGCGGCAUUGCGAGGGCGGUGCGAGCGA .((((((..((((..((.((((.(((.(((.((((.((((.........)))).)))).))))))))))))..))))..))))))(((((((....)))))))...... ( -49.80) >DroSim_CAF1 33713 109 - 1 GUGUUCUCGUAGUCCGCAGUCGUCUCGCUCACACUGCUGCAGAGGAGUAGCAGGAGUGCGAGGAGUGGCGUUAGCUGUAGGAGCGGCAUUGCGAGGGCGGUGCGAGCGA .((((((((((((((((.....((((((.(.(.(((((((......)))))))).).)))))).(..((....))..)....)))).)))))))))))).......... ( -48.40) >DroEre_CAF1 32928 107 - 1 GUGUUCUCGUAGUCCGCGGCCGUCUCGCUCACGCUGCUGGAGAGCAGUAGCAGGAGUGCGAGGAGAGGCGAUAUCUGCAGAAGCGGCAUUGCGAGGGCGGUGCGAG--A .((((((((((((((((.(((.((((((((..(((((((.....)))))))..))..))))))...)))....((....)).)))).)))))))))))).......--. ( -49.40) >DroYak_CAF1 33136 109 - 1 GUGUUCUCGUAGUCCGCGGCCGUCUCGCUCACACUGCUGCACAGCAGUAGCAGGAGUGCGAGGAGAGGCGAUAGCUGCAGGAGCGGCAUUGCGAGGGCGGUGCGAGCGA .(((((.(((..((((((((((((((.(((.((((.((((((....)).)))).)))).)))..))))))...))))).))))))(((((((....)))))))))))). ( -54.50) >consensus GUGUUCUCGUAGUCCGCAGCCGUCUCGCUCACACUGCUGCAGAGCAGUAGCAGGAGUGCGAGGAGUGGCGAUAGCUGCAGGAGCGGCAUUGCGAGGGCGGUGCGAGCGA ..(((((((((((.....((((.(((.(((.((((.((((.........)))).)))).))))))))))....(((((....))))))))))))))))........... (-34.17 = -35.95 + 1.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:25 2006