Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,028,150 – 12,028,245 |
Length | 95 |
Max. P | 0.659734 |
Location | 12,028,150 – 12,028,245 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 84.51 |
Mean single sequence MFE | -23.28 |
Consensus MFE | -12.10 |
Energy contribution | -14.10 |
Covariance contribution | 2.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.74 |
Structure conservation index | 0.52 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.659734 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12028150 95 + 20766785 CAAAGGC--ACAAAAAA----CACACCGAGUGCAGAGUCGUUGUAAACAAACGAG--UGGAGGCACAACAAUGUGCAACACAAUUGCUGCCGCACUUAAAAUU .......--........----......((((((....(((((.......)))))(--((...(((((....)))))..)))..........))))))...... ( -23.50) >DroSec_CAF1 29331 97 + 1 CAAAGGC--AGCAAAAACA--CACACCGAGUGCUGAGUCGUUGUAAACAAACGAG--UGGAGGCACAACAAUGUGGAACACAAUUGCUGCCGCACUUAAAAUU ....(((--(((((.....--........(((((.(.(((((.......))))).--)...))))).....((((...)))).))))))))............ ( -29.00) >DroEre_CAF1 29060 94 + 1 CAA-GGC--AGGAAAAA----CACACCGAGUGCAGAGUCGCUGUAAACAAACGAG--UGGAGGCACAACAAUGUGCAACACAAUUGCUGCCGCACUUAAAAUU ...-(((--((.((...----......(..(((((.....)))))..)......(--((...(((((....)))))..)))..)).)))))............ ( -25.80) >DroYak_CAF1 29097 97 + 1 CAAAGGCAAAGGAAAAA----CACACCGAGUGCAGAGUCGUUGUAAACAAACGAG--UGGAGGCACAACAAUGUGCAACACAAUUGCUGCCGCACUUAAAAUU ....((((..((.....----....))....((((..(((((.......)))))(--((...(((((....)))))..)))..))))))))............ ( -24.20) >DroAna_CAF1 24957 93 + 1 UCCAAGU--ACCUAAAACAAACACACACAUU--------GUAGUAAACAAACGAGAGUACAAGAACAACAAUGUGCAACACAAUUGCUGCCGCACUUAAAAUU ...((((--................((((((--------((.((......((....))......)).))))))))..........((....))))))...... ( -13.90) >consensus CAAAGGC__AGCAAAAA____CACACCGAGUGCAGAGUCGUUGUAAACAAACGAG__UGGAGGCACAACAAUGUGCAACACAAUUGCUGCCGCACUUAAAAUU ...........................((((((....(((((.......))))).......(((((((...((((...)))).))).))))))))))...... (-12.10 = -14.10 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:18 2006