Locus 363

Sequence ID 2R_DroMel_CAF1
Location 2,347,530 – 2,347,621
Length 91
Max. P 0.596665
window715

overview

Window 5

Location 2,347,530 – 2,347,621
Length 91
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 79.42
Mean single sequence MFE -28.60
Consensus MFE -20.17
Energy contribution -19.78
Covariance contribution -0.38
Combinations/Pair 1.23
Mean z-score -1.18
Structure conservation index 0.71
SVM decision value 0.13
SVM RNA-class probability 0.596665
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2347530 91 - 20766785
CAACUGCAGUUAGUGUAAUGUCAAUAUUGACAACGCUCCCAUUGAAUUCGCUGCUGUAAUCGUUGUACGAGCUGCGAAAGAAGACGGCGUC-----------------------------
.....((.((((((((..(((((....)))))))))).........(((((.((((((.......))).))).)))))....))).))...----------------------------- ( -22.80)
>DroVir_CAF1 3860 120 - 1
CGACAGCAGUUAGUGUAAUGUCAAUAUUGACUACGCUGCCAUUGAAUUCGCUGCUGUAAUCAUUGUAGGAGCUACGAAAGAACACAGCAUCCGCAUUGUCAGCUAUGUUGUUGCCGUGCC
..(((((((((((((((..((((....)))))))))))...........))))))))..........((((((.(....).....))).)))((((.(.((((......))))).)))). ( -34.30)
>DroPse_CAF1 2607 105 - 1
CAACUGCAGUUAGUGUAAUGUCAAUGUUGACAACACUCCCAUUGAAUUCGCUGCUGUAAUCAUUGUACGAGCUGCGGAAGAAGACAGCAUCGGCAACA---------UUGUUG------U
...((((((((.((((((((((((((..((......)).))))))....((....))...)))))))).))))))))......((((((..(....).---------.)))))------) ( -28.70)
>DroMoj_CAF1 5023 120 - 1
CGACAGCAGUUAGCGUAAUGUCAAUAUUGACAACGCUUCCAUUGAAUUCACUGCUGUAAUCAUUGUAAGAGCUACGAAAGAACACUGCAUCCGCAUUGUCAGCUAUGUUGUUGCCGUGCC
..((((((((.(((((..(((((....))))))))))............))))))))...(((.((((.(((..(....).(((.(((....))).))).......))).)))).))).. ( -32.62)
>DroAna_CAF1 10443 105 - 1
CAACUGCAGUUAGUGUAAUGUCAAUAUUGACAACGCUCCCAUUGAAUUCACUGCUGUAAUCGUUGUACGAGCUGCGAAAGAAGACAGCAUCGGCAAUU---------CCAUUC------C
..((.(((((.(((((..(((((....))))))))))......(....)))))).))....(((((.((((((((....)....)))).)))))))).---------......------. ( -24.50)
>DroPer_CAF1 2583 105 - 1
CAACUGCAGUUAGUGUAAUGUCAAUGUUGACAACACUCCCAUUGAAUUCGCUGCUGUAAUCAUUGUACGAGCUGCGGAAGAAGACAGCAUCGGCAACA---------UUGUUG------U
...((((((((.((((((((((((((..((......)).))))))....((....))...)))))))).))))))))......((((((..(....).---------.)))))------) ( -28.70)
>consensus
CAACUGCAGUUAGUGUAAUGUCAAUAUUGACAACGCUCCCAUUGAAUUCGCUGCUGUAAUCAUUGUACGAGCUGCGAAAGAAGACAGCAUCGGCAAUA_________UUGUUG______C
.....((.(..(((((..(((((....))))))))))..)...........((((((..((.(((((.....)))))..))..))))))...)).......................... (-20.17 = -19.78 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:27 2006