Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,014,065 – 12,014,182 |
Length | 117 |
Max. P | 0.626848 |
Location | 12,014,065 – 12,014,182 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 81.42 |
Mean single sequence MFE | -38.50 |
Consensus MFE | -24.94 |
Energy contribution | -24.42 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.39 |
Mean z-score | -1.69 |
Structure conservation index | 0.65 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626848 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12014065 117 - 20766785 AGCAAUGGUGGCAAUGGUGGCGUCAAG-AAUGUAAGCUGCCAAGUUGUCGAAC-UGGCGGAUCUGAUGAAACAGGUGCCGCCGAACCAGAUGCACAAGUUCAAAAUGUUUGCCAAGAAG .(((.((((((((((((..((..((..-..))...))..)))..)))))....-(((((((((((......))))).)))))).))))..))).......................... ( -38.40) >DroSec_CAF1 15435 117 - 1 AGCAAUGGUGGUAAUGGUGGCGUCAAG-AAUGUAAGCUGCCAAGUUGUUGAAC-UGGCGGAUCUGAUGAAACAGGUGCCGCCGAACCAGAUGCACAAGUUCAAAAUGUUUGCCAAGAAG ........(((((((((..((..((..-..))...))..))).....((((((-(((((((((((......))))).)))))......(.....).))))))).....))))))..... ( -36.00) >DroSim_CAF1 15948 117 - 1 AGCAAUGGUGGUAAUGGUGGCGUCAAG-AAUGUAAGCUGCCAAGUUGUCGAAC-UGGCGGAUCUGAUGAAACAGGUGCCGCCGAACCAGAUGCACAAGUUCAAAAUGUUUGCCAAGAAG .((((.(((((((...((..(((((.(-(.......((((((.(((....)))-)))))).)))))))..))...)))))))((((...........)))).......))))....... ( -34.60) >DroEre_CAF1 15466 117 - 1 AGUAAUGGUGGCAAUGGUGGGGCCAAA-AAGACAAGCUGCCAAGUUGUCCAAC-UGGCGGAUCUGAUGAAGCAGGUGCCGCCCAACCAGUUGCCGAAGUUCCAGAUGUUUGCCAAGAAG .....((((((((((((((((((((..-..(((((.((....)))))))....-))))(((((((......))))).)).))).)))).)))))(......)........))))..... ( -38.80) >DroYak_CAF1 15216 117 - 1 AGUAAUGGCGGAAGUGGUGGGGCCAAA-AAGACAAGCUGCCAAGUUAUACAAC-UGGCGGAUCUGAAGAAGCAGGUGCCGCCGAGCCAGUUGCCGAAGUUCCAAAUGUUUGCCAAGAAG .....(((((((.....((((((....-..(((..(((....((((....)))-)((((((((((......))))).))))).)))..)))......))))))....)))))))..... ( -38.00) >DroPer_CAF1 64578 114 - 1 AACGGCGGUGGCAGUGGCCCGACCAGGGCACCCAAGCAGC--AGCUGAUGAACAUGGCGGACAUGCUGCAGCGUGUGCCGCCCAACCAGCUGCCACAGUUCCAGAUGUU---CAAGAGG ...((..((((((((.((((.....)))).....(((...--.))).........(((((((((((....)))))).)))))......))))))))....)).......---....... ( -45.20) >consensus AGCAAUGGUGGCAAUGGUGGCGCCAAG_AAUGCAAGCUGCCAAGUUGUCGAAC_UGGCGGAUCUGAUGAAACAGGUGCCGCCGAACCAGAUGCACAAGUUCAAAAUGUUUGCCAAGAAG .(((.(((((((((((((((................))))))..)))))......((((((((((......))))).)))))..))))..))).......................... (-24.94 = -24.42 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:09 2006