Locus 3623

Sequence ID 2R_DroMel_CAF1
Location 12,011,905 – 12,011,998
Length 93
Max. P 0.505123
window5898

overview

Window 8

Location 12,011,905 – 12,011,998
Length 93
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 70.62
Mean single sequence MFE -36.07
Consensus MFE -14.54
Energy contribution -14.73
Covariance contribution 0.20
Combinations/Pair 1.32
Mean z-score -1.71
Structure conservation index 0.40
SVM decision value -0.06
SVM RNA-class probability 0.505123
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12011905 93 + 20766785
CCGGCCAGCAUUUUGGCCAAAAUGGCAUGCUUUUCGGCCAUUUCCAAUGCCUCGCGAUCUCGGCUGCUCACUUCGCCAGUUUGUUCGGCAGAU
..((((((....)))))).(((((((..........)))))))....((((..((((.((.(((..........))))).))))..))))... ( -29.30)
>DroPse_CAF1 66808 90 + 1
UUGGCCAGCAACUUGGCCAGCAGGGCGUGCUUCUCGGCCAUGGCCUGGUCGUUGUGAUCGCGGAACUGCGAUUCGCUGGA--GCUG-CGCGAU
((((((((....))))))))....(((((((((.((((((.....))))))..(((((((((....))))).)))).)))--)).)-)))... ( -39.60)
>DroEre_CAF1 13271 93 + 1
CCGGCCAGCAUUUUAGCCAAAAUGGCAUGCUUUUCGGCCAUGUCCAAGGCCUCGCGGUCGCGACUGCUCAUUUCGCCGGUUUGCUGGGCAGAU
..(.((((((..(..((..((((((((........((((........))))((((....)))).))).))))).))..)..)))))).).... ( -35.50)
>DroYak_CAF1 13074 93 + 1
CCGGCCAUCAUUUUGGCCAAAAUGGCAUGCUUUUCGGCCAUGUCCAAGGCUUCGCGGUCGCGACUGCUUAUUUCGCCGGAUUGAUUGGCAGAU
...(((((((.((((((.(((.(((((((((....)).)))).)))((((.((((....))))..)))).))).)))))).))).)))).... ( -33.90)
>DroAna_CAF1 9315 93 + 1
GUGGCCAGGAGUUUGGCCAACAAGGCAUGCUUCUCGGCCAUGGCCAGAGCCUCCUUGUCGCUGGGGGUCAUAUCCCCGGAUUCCGAUUGUGCU
((((((((((((...(((.....)))..)))))).))))))(((....))).....((((((((((((...))))))))....))))...... ( -38.70)
>DroPer_CAF1 62576 90 + 1
UUGGCCAGCAACUUGGCCAGCAGGGCGUGCUUCUCGGCCAUGGCCUGGGCGUUGUGAUCGCGGAACUGCGAUUCGCUGGA--GUUG-CGCGAU
((((((((....)))))))).....(((((..((((((....)))..((((....(((((((....))))))))))).))--)..)-)))).. ( -39.40)
>consensus
CCGGCCAGCAUUUUGGCCAAAAUGGCAUGCUUCUCGGCCAUGGCCAAGGCCUCGCGAUCGCGGCUGCUCAUUUCGCCGGAUUGCUGGGCAGAU
..((((((....)))))).....(((..((((...((......)).)))).((((....))))...........)))................ (-14.54 = -14.73 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:08 2006