Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,010,967 – 12,011,065 |
Length | 98 |
Max. P | 0.820111 |
Location | 12,010,967 – 12,011,065 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 95.31 |
Mean single sequence MFE | -19.44 |
Consensus MFE | -19.56 |
Energy contribution | -19.32 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.05 |
Mean z-score | -1.14 |
Structure conservation index | 1.01 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.820111 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12010967 98 + 20766785 AUUUAUAUACCUAGCUGUGUUGGCCAAUGAAUACACAUAAAUUAAAGCAGGGUUUAAGCGAAAUGUUUACAUUGCCCGCCAAAAAGCAGACCGAGCCA ..............((((.(((((..(((......)))...........((((.(((((.....)))))....)))))))))...))))......... ( -19.50) >DroSec_CAF1 12308 98 + 1 AUUUAUAUACCUAGCUGUGUUGGCCAAUGAAUACACAUAAAUUAAAGCAGGGUUUAAGCGAAAUGUUUACAUUGCCCGCCAAAAAGCAGACCGAACCA ..............((((.(((((..(((......)))...........((((.(((((.....)))))....)))))))))...))))......... ( -19.50) >DroSim_CAF1 12321 98 + 1 AUUUAUAUACCUAGCUGUGUUGGCCAAUGAAUACACAUAAAUUAAAGCAGGGUUUAAGCGAAAUGUUUACAUUGCCCGCCAAAAAGCAGACCGAACCA ..............((((.(((((..(((......)))...........((((.(((((.....)))))....)))))))))...))))......... ( -19.50) >DroEre_CAF1 12317 98 + 1 AUUUAUAUACCUAGCUAUAUUGGCCGAUGAAUACACAUAAAUAAAAGCAGGGCUUAAGCGAAAUGUUUACAUUGCCCGCCAAAAAGCAGACCAAACCA .............(((...(((((..(((......)))...........((((.(((((.....)))))....)))))))))..)))........... ( -18.80) >DroYak_CAF1 12114 98 + 1 AUUUAUAUACCCAGCUAUAUUGGCCGAUGAAUACACAUAAAUUAAAGCAGGGCUUAAGCGAAAUGUUUACAUUGCCCGCCAAAGAGCAGACCGAGCCA .............(((...(((((..(((......)))...........((((.(((((.....)))))....)))))))))..)))........... ( -19.90) >consensus AUUUAUAUACCUAGCUGUGUUGGCCAAUGAAUACACAUAAAUUAAAGCAGGGUUUAAGCGAAAUGUUUACAUUGCCCGCCAAAAAGCAGACCGAACCA .............(((...(((((..(((......)))...........((((.(((((.....)))))....)))))))))..)))........... (-19.56 = -19.32 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:07 2006