Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 12,009,664 – 12,009,770 |
Length | 106 |
Max. P | 0.648511 |
Location | 12,009,664 – 12,009,770 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 95.19 |
Mean single sequence MFE | -23.70 |
Consensus MFE | -18.82 |
Energy contribution | -19.94 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.70 |
Structure conservation index | 0.79 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.648511 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 12009664 106 + 20766785 AUAUAUUUGCAACUAGCCAAAUUUGUGAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGCGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU ..(((((...((((.((((...((((...((((.....)))).....(((((((...))))))).))))))))(((((((.....))))))).))))....))))) ( -21.90) >DroSec_CAF1 11048 106 + 1 AAAUAUUUGUUACUAGCCAAAUUUGUCAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGCGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU ........((((((((((....(..((..((((.....)))).....(((((((...)))))))...))..).)).))))))))(((((((...)))))))..... ( -24.10) >DroSim_CAF1 11054 106 + 1 AAAUAUUUGUUACUAGCCAAAUUUGUCAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGCGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU ........((((((((((....(..((..((((.....)))).....(((((((...)))))))...))..).)).))))))))(((((((...)))))))..... ( -24.10) >DroEre_CAF1 8771 106 + 1 AAAUAUUUGUCACUUACCAAAUUUGCCAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGCGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU .......((((..((((((...((((((.((((.....)))).....(((((((...))))))).....))))))..)))))).(((((((...))))))))))). ( -25.50) >DroYak_CAF1 10829 106 + 1 AAAUGUUUGUUACCUAACAAAUUUGUCAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGUGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU ........((((((..((....(..((..((((.....)))).....(((((((...)))))))...))..)..))..))))))(((((((...)))))))..... ( -22.90) >consensus AAAUAUUUGUUACUAGCCAAAUUUGUCAAACUGUAGAACGGUAUAACUAAUAAGACACUUAUUAUGCGAUGGCGGUCUGGUAACGUUAGACCAAGUUUAACGAUAU ..(((((.((((((((((....((((...((((.....)))).....(((((((...))))))).))))....)).))))))))(((((((...)))))))))))) (-18.82 = -19.94 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:06 2006