Locus 3618

Sequence ID 2R_DroMel_CAF1
Location 12,002,393 – 12,002,513
Length 120
Max. P 0.937427
window5890

overview

Window 0

Location 12,002,393 – 12,002,513
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.58
Mean single sequence MFE -39.48
Consensus MFE -32.72
Energy contribution -33.12
Covariance contribution 0.40
Combinations/Pair 1.22
Mean z-score -2.00
Structure conservation index 0.83
SVM decision value 1.26
SVM RNA-class probability 0.937427
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 12002393 120 + 20766785
GUACUCACAUUUGUGCGGGCGAAAGUAAACAUUAUGUUGGCAAAGGCGAUUCUGGAGGUCCGCUGGGCAGUAUGGUGGAUUAUAAGUACGCCAAGCGUUUCUUUCAAUUCGGAAUCGUUA
...((.((((.(((....((....))..)))..)))).))....((((((((((((((..((((.(((.((((..((.....)).))))))).))))..))))......)))))))))). ( -36.00)
>DroSec_CAF1 3755 120 + 1
GUACCCACAUUUGUGCUGGCGAAAGUAAAUAUUAUGUGGGCAAAGGCGAUUCUGGAGGUCCGCUGGGAAUCAUGCUGGAUUAUAAUUACGCCAAGCGUUUCUUUCAAUUCGGAAUCGUUA
...(((((((.(((....((....))..)))..)))))))....(((((((((((((((((((((.....)).)).)))))......((((...)))).........)))))))))))). ( -37.80)
>DroSim_CAF1 3488 120 + 1
GUACCCACAUCUGUGCUGGCGAAAGUAAACAUUAUGUGGGCAAGGGCGAUUCUGGAGGUCCGCUGGGAAUCAUGGUGGAUUAUAAUUACGCCAAGCGUUUCUUUCAAUUCGGAAUCGUUA
...(((((((..(((...((....))...))).)))))))....(((((((((((((((((((((.......)))))))))......((((...)))).........)))))))))))). ( -42.20)
>DroEre_CAF1 2612 120 + 1
UAACCCACAUUUGUGCUGGAGAAAGUAAACAUUAUGUGGGCGUAGGCGAUUCUGGAGGUCCGCUGGGAAGCAUGUUGGAACGCGAUCAUCUCAAGCGAUUCUAUCAAUUUGGAAUUGUUA
...(((((((.((((((......)))..)))..)))))))....((((((((..((.....(((....))).((.((((((((...........))).))))).)).))..)))))))). ( -36.00)
>DroYak_CAF1 3307 120 + 1
GAACCCACAUUUGUGCCGGCGAAAGUAGACAUUAUGUGGGCAUUGGCGACUCUGGAGGUCCGCUGGGUAACCUGGUGGACUACAAUCAGGCCAAGCGCUUCUUUCAAUUCGGAAUCGUUA
...(((((((..(((.(.((....)).).))).)))))))...((((((.(((((((((((((..((...))..)))))))......((((.....)))).......)))))).)))))) ( -45.40)
>consensus
GUACCCACAUUUGUGCUGGCGAAAGUAAACAUUAUGUGGGCAAAGGCGAUUCUGGAGGUCCGCUGGGAAGCAUGGUGGAUUAUAAUUACGCCAAGCGUUUCUUUCAAUUCGGAAUCGUUA
...(((((((..(((...((....))...))).)))))))....(((((((((((((((((((((.......))))))))).......(((...)))..........)))))))))))). (-32.72 = -33.12 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:00:00 2006