Locus 3617

Sequence ID 2R_DroMel_CAF1
Location 11,999,109 – 11,999,211
Length 102
Max. P 0.586891
window5889

overview

Window 9

Location 11,999,109 – 11,999,211
Length 102
Sequences 6
Columns 109
Reading direction reverse
Mean pairwise identity 79.68
Mean single sequence MFE -31.28
Consensus MFE -17.46
Energy contribution -19.02
Covariance contribution 1.56
Combinations/Pair 1.27
Mean z-score -1.83
Structure conservation index 0.56
SVM decision value 0.11
SVM RNA-class probability 0.586891
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11999109 102 - 20766785
CU----GACGCAAUUUG-CAGAGAAUGCCUCAUUGAUUUGGGCUUUUGGGCCCAGUUAUGUA--CUGAUAUCGGAUGCCUAAAAGUCCCACUGACAAGUCGGUGAUAAA
.(----((.(((.(((.-...))).))).))).......((((((((((((.((....))..--(((....)))..))))))))))))((((((....))))))..... ( -30.90)
>DroSec_CAF1 54211 101 - 1
CU----GACGCAAUUUG-CAGAGAAUGCCUCAUUGAUUC-GGCUUUUGGGCCCAGUUAUGGA--CUGAUAUCGGAUGCCUAAAAGUCCCACUGACAAGUCGGUGAUAAA
..----((..((((..(-((.....)))...))))..))-((((((((((((((....))).--(((....)))..))))))))))).((((((....))))))..... ( -32.10)
>DroSim_CAF1 53784 101 - 1
CU----GACGCAAUUUG-CAGAGAAUGCCUCAUUGAUUC-GGCUUUUGGGCCCAGUUAUGGA--CUGAUAUCGGAUGCCUAAAAGUCCCACUGACAAGUCGGUGAUAAA
..----((..((((..(-((.....)))...))))..))-((((((((((((((....))).--(((....)))..))))))))))).((((((....))))))..... ( -32.10)
>DroEre_CAF1 50429 105 - 1
CAAUGCAUCGCAAUUUG-CAGAGAAUGCCUCAUUGAUUC-GGCUUUUGGGCCCAGUUAUGGA--GCGAUAUCGGAUGGCUAAAAGUCCCACUGACAAGUUGGUGAUAAA
......(((((((((((-(((....(((..(((.((((.-((((....)))).)))))))..--))).....((((........))))..))).)))))).)))))... ( -29.60)
>DroYak_CAF1 52195 103 - 1
CU----GACGCAAUUUG-CAGAGAAUGCCUCAUUGAUUC-GACUUUUGGGCCCAGUUAUGGGAUGCGAUAUCGGAUGCCCAAAAGUCCCACUGACAAGUUGGUGAUAAA
..----.((.(((((((-(((.((((.........))))-((((((((((((((....))).((.((....)).)))))))))))))...))).)))))))))...... ( -34.60)
>DroAna_CAF1 53068 89 - 1
C-----GAUGCAAUUCCCCCCAGGAAGCCCCAUCGAUU--------UGGGCC-----AGGGA--GUGGUAUUUGGCGCCCAAAAGUCACUCGGAUGCAUUCUCUUUAAG
.-----((((((..(((..((.((....((((......--------))))))-----.))((--((((..(((((...)))))..)))))))))))))))......... ( -28.40)
>consensus
CU____GACGCAAUUUG_CAGAGAAUGCCUCAUUGAUUC_GGCUUUUGGGCCCAGUUAUGGA__CUGAUAUCGGAUGCCUAAAAGUCCCACUGACAAGUCGGUGAUAAA
......((.(((.(((......)))))).)).........((((((((((((((....)))....((....))...))))))))))).((((((....))))))..... (-17.46 = -19.02 +   1.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:59 2006