Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,998,992 – 11,999,094 |
Length | 102 |
Max. P | 0.822518 |
Location | 11,998,992 – 11,999,094 |
---|---|
Length | 102 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 79.28 |
Mean single sequence MFE | -26.10 |
Consensus MFE | -14.97 |
Energy contribution | -15.63 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.17 |
Mean z-score | -2.09 |
Structure conservation index | 0.57 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.822518 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11998992 102 + 20766785 --GCUUAUAUGGCCGCAUUUUGUGGCAAAUAAACUUGCAACUG-CCAGCCAUAAAAACUAUGUCGAUGUCGACAAAUUAUGCACCAAGC-------ACGACAGCAUAA-AGU--C- --((((.((((((.(((....((.((((......)))).))))-)..)))))).......(((((....)))))...........))))-------..(((.......-.))--)- ( -24.60) >DroVir_CAF1 54383 91 + 1 GCGCUUAUAUGAUCGCAUUUUGUGGCAAGUCAGCAUGC------------AUAAAAACUGUGUCGAUGUUGGCAAAUUGUGCGUU--G----------CACAGCAUAA-AAUAUCG (((.((....)).)))((((((((....((((((((((------------(((.....)))))..))))))))...((((((...--)----------))))))))))-))).... ( -25.70) >DroSim_CAF1 53667 102 + 1 --GCUUAUAUGGCCGCAUUUUGUGGCAAAUAAACUUGCAACUG-CCAGCCAUAAAAACUAUGUCGAUGUCGACAAAUUAUGCAGCAAGC-------ACGACAGCAUAA-AGU--C- --((((.((((((.(((....((.((((......)))).))))-)..)))))).......(((((....)))))...........))))-------..(((.......-.))--)- ( -24.60) >DroYak_CAF1 52078 102 + 1 --GCUUAUAUGGCCGCAUUUUGUGGCAAAUAAACUUGCAACUG-CCAGCCAUAAAAACUAUGUCGAUGUCGACAAAUUAUGCACCAUGC-------ACGACAGCAUAA-AGU--C- --((...((((((.(((....((.((((......)))).))))-)..)))))).......(((((....)))))......))...((((-------......))))..-...--.- ( -24.70) >DroAna_CAF1 52934 109 + 1 --GCUUAUAUGGCCGCAUUUUGUGGCAAAUAAACUUGCAACUG-CCAACCAUAAAAACUAUGUCGAUGUCGACAAAUUAUGCACUGAGCUUGUCUCUCGACAGAAUAA-AAU--C- --((((((((((((((.....)))))..........((....)-)....)))).......(((((....)))))..........)))))(((((....))))).....-...--.- ( -25.30) >DroMoj_CAF1 63353 102 + 1 --GCUAAUAUGAUCGCAUUUUGUGGCAAGUCAGCUUGCAACUGGCAAGCCAUAAAAACUGUGUCGAUGCUAACAAAUUGUGCGUG--G----------CACAGCAUAAAAAUGUCG --.....((((......(((((((((..(((((.......)))))..))))))))).(((((((.((((...........)))))--)----------)))))))))......... ( -31.70) >consensus __GCUUAUAUGGCCGCAUUUUGUGGCAAAUAAACUUGCAACUG_CCAGCCAUAAAAACUAUGUCGAUGUCGACAAAUUAUGCACCAAGC_______ACGACAGCAUAA_AAU__C_ .......(((((((((.....)))((((......)))).........)))))).......(((((....)))))..((((((....................))))))........ (-14.97 = -15.63 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:58 2006