Locus 3615

Sequence ID 2R_DroMel_CAF1
Location 11,998,870 – 11,998,969
Length 99
Max. P 0.915293
window5887

overview

Window 7

Location 11,998,870 – 11,998,969
Length 99
Sequences 4
Columns 99
Reading direction forward
Mean pairwise identity 97.47
Mean single sequence MFE -34.18
Consensus MFE -31.67
Energy contribution -31.93
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.35
Structure conservation index 0.93
SVM decision value 1.10
SVM RNA-class probability 0.915293
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11998870 99 + 20766785
GGGCGUUGCGAGUGCAACAACUUUUGUUGCAUAUUCAGCAGCAAUGGCUGCAACAUCAACGGCAACAACAGCAAACAGCGAUGGCGGGCGCAAUUUGGU
..(((((((((((((((((.....))))))))..)).(((((....)))))..((((...(....)....((.....)))))))).)))))........ ( -33.70)
>DroSec_CAF1 53972 99 + 1
GGGCGUUGCGAGUGCAACAACUUUUGUUGCAUAUUCAGCAGCAAUGGCUGCAACAUCAACGGCAACAACAGCAAACAGCGAUGGCGGGCGCAAUUUGGU
..(((((((((((((((((.....))))))))..)).(((((....)))))..((((...(....)....((.....)))))))).)))))........ ( -33.70)
>DroSim_CAF1 53545 99 + 1
GGGCGUUGCGAGUGCAACAACUUUUGUUGCAUAUUCAGCAGCAAUGGCUGCAACAUCAACGGCAACAACAGCAAACAGCGAUGGCGGGCGCAAUUUGGU
..(((((((((((((((((.....))))))))..)).(((((....)))))..((((...(....)....((.....)))))))).)))))........ ( -33.70)
>DroEre_CAF1 50189 98 + 1
GGGCGUUGCAAGUGCAACAACUUUUGUUGCAUAUUCAGCAGCAAUUGCUGCAACAUCAACUGCAACAACAGCA-ACUGCGAUGGCGGGCGCAAUUUGGU
(.((((((((.((((((((.....)))))))).....(((((....))))).........)))))).......-.((((....)))))).)........ ( -35.60)
>consensus
GGGCGUUGCGAGUGCAACAACUUUUGUUGCAUAUUCAGCAGCAAUGGCUGCAACAUCAACGGCAACAACAGCAAACAGCGAUGGCGGGCGCAAUUUGGU
..(((((((..((((((((.....)))))))).....(((((....)))))..((((...(....)....((.....)))))))).)))))........ (-31.67 = -31.93 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:57 2006