Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,997,560 – 11,997,658 |
Length | 98 |
Max. P | 0.706590 |
Location | 11,997,560 – 11,997,658 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 86.61 |
Mean single sequence MFE | -27.63 |
Consensus MFE | -22.92 |
Energy contribution | -23.03 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.12 |
Mean z-score | -1.93 |
Structure conservation index | 0.83 |
SVM decision value | 0.36 |
SVM RNA-class probability | 0.706590 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11997560 98 + 20766785 C---GGCACUGACUCCUGUAACUGAUAUUGCAGUUAAGGCGGUAACGAGUCUGCCGCCCAAGGAGCACAAAAAAAAAAA--------GAAAUCGACCACUCCUGCUGCU------ (---((((.((.(((((.((((((......)))))).(((((((.......)))))))..)))))))............--------(....).........)))))..------ ( -27.40) >DroSec_CAF1 52698 95 + 1 C---AGCACUGACUCCUGUAACUGAUAUUGCAGUUAAGGCGGUAACGAGUCUGCCGCCCAAGGAGCA------AAAAAA--------CAAAUCGACCACUCCUGCUGCU---GCU (---((((.((.(((((.((((((......)))))).(((((((.......)))))))..)))))))------......--------......((....)).)))))..---... ( -28.10) >DroSim_CAF1 52250 95 + 1 C---AGCACUGACUCCUGUAACUGAUAUUGCAGUUAAGGCGGUAACGAGUCUGCCGCCCAAGGAGCA------AAAAAA--------CAAAUCGACCACUCCUGCUGCU---GCU (---((((.((.(((((.((((((......)))))).(((((((.......)))))))..)))))))------......--------......((....)).)))))..---... ( -28.10) >DroEre_CAF1 48895 94 + 1 C---AGCACUGACUCCUGUAACUGAUAUUGCAGUUAAGGCGGUAACGAGUCUGCCGCCCAAGGAGCA------UAAAAA--------CAAAUCGACUACUCCUGCUGCU---GC- (---((((.((.(((((.((((((......)))))).(((((((.......)))))))..)))))))------......--------......((....)).)))))..---..- ( -27.90) >DroYak_CAF1 50742 95 + 1 C---AGCACUGACUCCUGUAACUGAUAUUGCAGUUAAGGCGGUAACGAGUCUGCCGCCCAAGGAGCA------AAAAAA--------CAAAUCGAGCACUCCUGCUGCU---ACU .---(((..((.(((((.((((((......)))))).(((((((.......)))))))..)))))))------......--------.......((((....)))))))---... ( -30.30) >DroAna_CAF1 51564 109 + 1 UCGGAGCGGUGACUCCUGUAACUGAUAUUGCAGUUAAGGCGGUAACGAGUCUUCUGCCCAAGGACCA------AAAAAAACAAAAACCAAAUCGACCCAUCAUGCCACUGCCACU ..(..((((((..((((.((((((......)))))).(((((...........)))))..))))...------....................((....))....))))))..). ( -24.00) >consensus C___AGCACUGACUCCUGUAACUGAUAUUGCAGUUAAGGCGGUAACGAGUCUGCCGCCCAAGGAGCA______AAAAAA________CAAAUCGACCACUCCUGCUGCU___GCU ....((((.((.(((((.((((((......)))))).(((((((.......)))))))..)))))))..........................((....)).))))......... (-22.92 = -23.03 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:56 2006