Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,988,414 – 11,988,504 |
Length | 90 |
Max. P | 0.523094 |
Location | 11,988,414 – 11,988,504 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 82.40 |
Mean single sequence MFE | -24.89 |
Consensus MFE | -17.31 |
Energy contribution | -17.95 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.20 |
Mean z-score | -1.44 |
Structure conservation index | 0.70 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.523094 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11988414 90 - 20766785 CCAGCGGAACUAGUUCCACGAAUGGAUUUGCAUAUCCGGAAGUGGA-GUGGUGGGCAGUGCCCAAAACAAUCUCA--CAGAGUAUUC----------ACCAAU .....((.......(((((...(((((......)))))...)))))-((..(((((...)))))..)).......--..........----------.))... ( -25.90) >DroSec_CAF1 39509 90 - 1 CCAGCGGAACUAGUUCCACGAAUGGAUUUGCAUAUCUGGAAGUGGA-GUGGUGGGCAGUGCCCAAAACAAUCUCG--AAGAGUAUUC----------ACCAAU .....((..(((.(((((.(((((......))).))))))).))).-((..(((((...)))))..))......(--((.....)))----------.))... ( -23.50) >DroSim_CAF1 43160 90 - 1 CCAGCGGAACUAGUUCCACGAAUGGAUUUGCAUAUCCGGAAGUGGA-GUGGUGGGCAGUGCUCAAAACAAUCUCG--AAGAGUAUUC----------ACCAAU ........((((.((((((...(((((......)))))...)))))-)))))((..(((((((............--..))))))).----------.))... ( -25.64) >DroEre_CAF1 39839 90 - 1 CCAGCGGAACUAGUUCCACGAAUGGAUUUGCAUAUCCGGAAGUGGA-GUGCUGGGCACUGCCCGAAACAAUCUCA--AAGAAUACUC----------ACCAAU .....((.......(((((...(((((......)))))...)))))-((..(((((...)))))..)).......--..........----------.))... ( -24.10) >DroYak_CAF1 40339 92 - 1 CCAGCGGAACUAGUUCCACGAAUGGAUUUGCAUAUCCGGAAGUGGA-GCGGUGGGCACUGCCCGAAACAAACUGAAAAAGAAUAUUC----------ACCAAU ............(((((((...(((((......)))))...)))))-))(((((((...))))..........(((........)))----------)))... ( -27.20) >DroAna_CAF1 43026 99 - 1 CAAACGGAACUGGUUCCACGGAAGGAUUUGCAUAUUCACGAGUGCAUGUGGUAGGCACA--CAUAAAAAAUCCCU--UAGAAACUUCCGGAAACUCAACCAAA .....((((....)))).((((((..(((((((........))))(((((.......))--)))...........--.)))..)))))).............. ( -23.00) >consensus CCAGCGGAACUAGUUCCACGAAUGGAUUUGCAUAUCCGGAAGUGGA_GUGGUGGGCACUGCCCAAAACAAUCUCA__AAGAAUAUUC__________ACCAAU .....((.((((..(((((...(((((......)))))...)))))..))))((((...))))...................................))... (-17.31 = -17.95 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:48 2006