Locus 3608

Sequence ID 2R_DroMel_CAF1
Location 11,987,738 – 11,987,829
Length 91
Max. P 0.540537
window5877

overview

Window 7

Location 11,987,738 – 11,987,829
Length 91
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 79.14
Mean single sequence MFE -29.82
Consensus MFE -13.16
Energy contribution -12.38
Covariance contribution -0.77
Combinations/Pair 1.35
Mean z-score -2.26
Structure conservation index 0.44
SVM decision value 0.01
SVM RNA-class probability 0.540537
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11987738 91 - 20766785
GGGUGGU-UGUUG----CUCCCCGGCACCCCUUUGCCAAAUCGCACAAUA----------CACGACCCCCUUUCACUGAGCCAGCCCUUUGUUUGGGUUCGGUUUA
(((.(((-(((((----(.....((((......)))).....))).....----------.)))))))))......(((((((((((.......))))).)))))) ( -31.30)
>DroSec_CAF1 38855 87 - 1
GGGUGGU-UGUGG----GUCCCCUGCACCCCCUUGCCAAAUCGCACAAUA----------CACGACCCCCUUUCACUGAG----CCCUUUGUUUGGGUUCGGUUUA
(((.(((-(((((----((.......)))....(((......))).....----------))))))))))....((((((----(((.......)))))))))... ( -32.50)
>DroSim_CAF1 42493 87 - 1
GGGUGGU-UGUGG----GUCCCCUGCACCCCCUUGCCAAAUCGCACAAUA----------CACGACCCCCUUUUACUGAG----CCCUUUGUUUGGGUUCGGUUUA
(((.(((-(((((----((.......)))....(((......))).....----------))))))))))....((((((----(((.......)))))))))... ( -32.40)
>DroEre_CAF1 39238 87 - 1
GGGUGGA-UGUGA----GUAACCGGCACCCCUUUGCCAAAUCGCACAAAA----------CACGACCCCCUUUCACUGAG----CCCAUUGUUUGGGUUCGGUAUA
(((.((.-((((.----(....)((((......)))).............----------)))).)))))....((((((----((((.....))))))))))... ( -31.00)
>DroYak_CAF1 39743 91 - 1
GGGUGGA-UGUGAGUGAGUACCCGGCACCCCUUUGCCAAAUCGCACAAUA----------CACGACCCCCUUUCACUGAG----CCCUUUGUUUGGGUUCGAUAUA
(((.((.-((((.(((.(.....((((......))))....).)))....----------)))).)))))......((((----(((.......)))))))..... ( -27.70)
>DroAna_CAF1 42347 98 - 1
GGGCGAAUCCUUA----GUGCUCAGUGCUCCUUUACGAAAUCAUACAAUGUGAAUCCUGCCGCACCCCCACUUUGCUGAG----CCCUUUGUUUGGGUUCAGUUUA
(((((........----.))))).((((((......))..((((.....))))........)))).........((((((----(((.......)))))))))... ( -24.00)
>consensus
GGGUGGA_UGUGA____GUCCCCGGCACCCCUUUGCCAAAUCGCACAAUA__________CACGACCCCCUUUCACUGAG____CCCUUUGUUUGGGUUCGGUUUA
(((((....................)))))...(((......))).............................((((((....(((.......)))))))))... (-13.16 = -12.38 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:47 2006