Locus 3607

Sequence ID 2R_DroMel_CAF1
Location 11,987,212 – 11,987,313
Length 101
Max. P 0.654371
window5876

overview

Window 6

Location 11,987,212 – 11,987,313
Length 101
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 90.82
Mean single sequence MFE -30.87
Consensus MFE -23.85
Energy contribution -24.47
Covariance contribution 0.61
Combinations/Pair 1.14
Mean z-score -2.86
Structure conservation index 0.77
SVM decision value 0.25
SVM RNA-class probability 0.654371
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11987212 101 + 20766785
GAUGUAAUAUGAU----AAGUUU-UUUGCCAAGUGCCUGCGCGCCAUUUGCAUACAAAUGGGCGUUGGACUUUGACGCAUAAGUUCGCUGGCAAUUUGCUUAUAAA
...........((----((((..-.((((((.(((((.((((.(((((((....))))))))))).))((((........)))).)))))))))...))))))... ( -34.00)
>DroSec_CAF1 38326 102 + 1
AAUGUAAUAAGAU----AAGUUUUUUUGCCAAGUGCCUGCUCGCCAUUUGCAUACAAAUGGGCGUUGGACUUUGACGCAUAAGUUCGCUGGCAAUUUGCUUAUAAA
...........((----((((....((((((.(((...(((..(((((((....)))))))((((..(...)..))))...))).)))))))))...))))))... ( -30.80)
>DroSim_CAF1 41963 102 + 1
UAUGUAAUAAGAU----AAGUUUUUUUGCCAAGUGCCUGCGCGCCAUUUGCAUACAAAUGGGCGUUGGACUUUGACGCAUAAGUUCGCUGGCAAUUUGCUUAUAAA
...........((----((((....((((((.(((((.((((.(((((((....))))))))))).))((((........)))).)))))))))...))))))... ( -33.30)
>DroEre_CAF1 38717 101 + 1
GAAGUAAUAAGAU----AAGUUU-UUUGCCAAGUGCCUGCGCGCCAUUUGCAUACAAAUGGGCGUUGGACUUUGACGCAUAAGUUCGCUGGCAAUUUGCUUAUAAA
...........((----((((..-.((((((.(((((.((((.(((((((....))))))))))).))((((........)))).)))))))))...))))))... ( -34.00)
>DroYak_CAF1 39210 102 + 1
AAAGUAAUAAGAU----AAGUUUUUUUGCCAAGUGCCUGCGCGCCAUUUGCAUACAAAUGGGCGUUGGACUUUGACGCAUAAGUUCGCUGGCAAUUUGCUUAUAAA
...........((----((((....((((((.(((((.((((.(((((((....))))))))))).))((((........)))).)))))))))...))))))... ( -33.30)
>DroAna_CAF1 41846 102 + 1
---GUAAUAAUACUUUAUAGUUU-UUCUUUCAGUGUAUAGCUGACAUUUGCAUACAAAUGGGCGUUGGACUUUGACGCAUAAGUUCGCUGGCAAUUUGCUUAUAAA
---...........((((((...-......(((((...((((..((((((....)))))).((((..(...)..))))...)))))))))((.....)))))))). ( -19.80)
>consensus
AAUGUAAUAAGAU____AAGUUU_UUUGCCAAGUGCCUGCGCGCCAUUUGCAUACAAAUGGGCGUUGGACUUUGACGCAUAAGUUCGCUGGCAAUUUGCUUAUAAA
.................((((....(((((.(((....((((.(((((((....))))))))))).((((((........))))))))))))))...))))..... (-23.85 = -24.47 +   0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:46 2006