Locus 3604

Sequence ID 2R_DroMel_CAF1
Location 11,985,376 – 11,985,473
Length 97
Max. P 0.627500
window5872

overview

Window 2

Location 11,985,376 – 11,985,473
Length 97
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 77.62
Mean single sequence MFE -18.62
Consensus MFE -10.53
Energy contribution -10.67
Covariance contribution 0.14
Combinations/Pair 1.14
Mean z-score -1.66
Structure conservation index 0.57
SVM decision value 0.19
SVM RNA-class probability 0.627500
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11985376 97 - 20766785
GUUG-------GUGUGCAUAUGUAAAACCUAAUUACAACUAAUUAGUAUUUGCACAAGUGACAACCUUUGACCCAAUGUAAACAAUGGCGGAC------AACAACAACAC--------
((((-------.(((.(...((((((..(((((((....)))))))..))))))..................(((.((....)).))).).))------).)))).....-------- ( -19.70)
>DroVir_CAF1 39850 91 - 1
UGCGAUG----CAGUGCAUAUGUAAAACCUAAUUACAACUAAUUACUAUUUGCACAACUGACAACCUUUGACCUAAUGCAAACAA-------------------AAACAUUCAA----
.....((----(((((((...((((.................))))....)))))......((.....))......)))).....-------------------..........---- (  -9.93)
>DroEre_CAF1 36809 94 - 1
GUUG-------GUGUGCAUAUGUAAAACCUAAUUACAACUAAUUAGUAUUUGCACAAGUGACAACCUUUGACCCAAUGUAAACAAUGGCGGAC------AAC---AACAC--------
((((-------.(((.(...((((((..(((((((....)))))))..))))))..................(((.((....)).))).).))------).)---)))..-------- ( -19.70)
>DroYak_CAF1 37321 94 - 1
GUUG-------GUGUGCAUAUGUAAAACCUAAUUACAACUAAUUAGUAUUUGCACAAGUGACAACCUUUGACCCAAUGUAAACAAUGGCGGAC------AAC---AACAC--------
((((-------.(((.(...((((((..(((((((....)))))))..))))))..................(((.((....)).))).).))------).)---)))..-------- ( -19.70)
>DroAna_CAF1 39999 103 - 1
GUUG-------AUGUGCAUAUGUAAAACCUAAUUACAACUAAUUAGUAUUUGCACAAGUGACAACCUUUGACCCAAUGCAAACAAUGGACGGCGGCAGUAGCAACAACAC--------
((((-------.((((((...(((....(((((((....)))))))))).)))))).((.((..((.(((..(((.((....)).))).))).))..)).))..))))..-------- ( -21.50)
>DroMoj_CAF1 44904 99 - 1
GCCGCUGUGCGUAGUGCAUAUGUAAAACCUAAUUACAACUAAUUGCUAUUUGCACAGCUGACAACCUUUGACCUAAUGCAAACAA-------------------AAACAUGCAUUCGC
...((((((((....(((..(((((.......)))))......)))....))))))))................((((((.....-------------------.....))))))... ( -21.20)
>consensus
GUUG_______GUGUGCAUAUGUAAAACCUAAUUACAACUAAUUAGUAUUUGCACAAGUGACAACCUUUGACCCAAUGCAAACAAUGGCGGAC______AAC___AACAC________
..............(((((.((((((..(((((((....)))))))..))))))((((........)))).....)))))...................................... (-10.53 = -10.67 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:42 2006