Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,984,691 – 11,984,799 |
Length | 108 |
Max. P | 0.997238 |
Location | 11,984,691 – 11,984,799 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 71.10 |
Mean single sequence MFE | -22.13 |
Consensus MFE | -10.10 |
Energy contribution | -10.70 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.00 |
Mean z-score | -2.52 |
Structure conservation index | 0.46 |
SVM decision value | 2.82 |
SVM RNA-class probability | 0.997238 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11984691 108 + 20766785 AAUACUUAGCAUUAAUCUGCCGAAGUUGCGGUGUGUUUCAUUUAGCUUGGCAUA---AAAGCACUAUGCAUUUCUUGCAGUGCACCCAUAUGCACACAUAUGCACAAUAGC ........((.......((((.((((((.((((.....))))))))))))))..---...(((...((((.....))))(((((......))))).....)))......)) ( -25.10) >DroSec_CAF1 35906 108 + 1 AAUACCUAGUAUUAAAGUGCCCAAA-UGCAGCGUGUUUUAUUGAUUUUGCCAUGCACAAUGCACAAUGCAUUGCUUGCAGUGCACCCA--UGCACACAUAUGCACAAUAGC ................((((.....-(((((((((...............))))).((((((.....))))))..))))(((((....--)))))......))))...... ( -27.06) >DroSim_CAF1 39464 96 + 1 AAUACUUAGCAUUAAUGUGCCAAA----------GUUAAAUUUAGCUUUCCAUA---AAAGCACUAUGCAUUUCUUGCAGUGCACCCA--UGCACACAUAUGCACAAUAGC ........((((...(((((.(((----------((((....))))))).....---...(((((..(((.....)))))))).....--.)))))...))))........ ( -24.10) >DroEre_CAF1 36123 83 + 1 AAUACUUGCUAUUAG--------------------U----UUUAUUUUGUCAUGC--CAAACCCAAUGCAUUUCUCGCAGUGCACCCG--UGCACACAUAUGCACAAUAGC .......((((((..--------------------.----...............--.........((((((......))))))...(--((((......))))))))))) ( -15.80) >DroYak_CAF1 36673 83 + 1 UAAACUUAAUAGUAG--------------------C----UCUAUUUUGGCAUGA--AAAGCACAAUGCAUUUCUUGCAGUGCACCCA--UGCACACAAAUGCACAAUAGC ...........((.(--------------------(----.....(((((((.((--((.((.....)).)))).))).(((((....--))))).)))).))))...... ( -18.60) >consensus AAUACUUAGUAUUAA__UGCC_AA__________GUU__AUUUAUUUUGCCAUG___AAAGCACAAUGCAUUUCUUGCAGUGCACCCA__UGCACACAUAUGCACAAUAGC ............................................................(((...((((.....))))(((((......))))).....)))........ (-10.10 = -10.70 + 0.60)
Location | 11,984,691 – 11,984,799 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 71.10 |
Mean single sequence MFE | -25.14 |
Consensus MFE | -14.08 |
Energy contribution | -13.76 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.70 |
Structure conservation index | 0.56 |
SVM decision value | 0.63 |
SVM RNA-class probability | 0.805914 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11984691 108 - 20766785 GCUAUUGUGCAUAUGUGUGCAUAUGGGUGCACUGCAAGAAAUGCAUAGUGCUUU---UAUGCCAAGCUAAAUGAAACACACCGCAACUUCGGCAGAUUAAUGCUAAGUAUU ((...(((((((.(((((((((....)))))).)))....)))))))(((.(((---(((..........)))))))))...)).((((.((((......))))))))... ( -28.20) >DroSec_CAF1 35906 108 - 1 GCUAUUGUGCAUAUGUGUGCA--UGGGUGCACUGCAAGCAAUGCAUUGUGCAUUGUGCAUGGCAAAAUCAAUAAAACACGCUGCA-UUUGGGCACUUUAAUACUAGGUAUU (((...(((((..(((((...--(((.(((..(((..(((((((.....))))))))))..)))...))).....))))).))))-)...)))((((.......))))... ( -31.20) >DroSim_CAF1 39464 96 - 1 GCUAUUGUGCAUAUGUGUGCA--UGGGUGCACUGCAAGAAAUGCAUAGUGCUUU---UAUGGAAAGCUAAAUUUAAC----------UUUGGCACAUUAAUGCUAAGUAUU ...(((((((((.((((((((--....))))).)))....)))))))))(((((---(...))))))........((----------((.((((......))))))))... ( -24.60) >DroEre_CAF1 36123 83 - 1 GCUAUUGUGCAUAUGUGUGCA--CGGGUGCACUGCGAGAAAUGCAUUGGGUUUG--GCAUGACAAAAUAAA----A--------------------CUAAUAGCAAGUAUU ((((((((((((.((((((((--....))))).)))....)))))(((..((((--......)))).))).----.--------------------.)))))))....... ( -20.10) >DroYak_CAF1 36673 83 - 1 GCUAUUGUGCAUUUGUGUGCA--UGGGUGCACUGCAAGAAAUGCAUUGUGCUUU--UCAUGCCAAAAUAGA----G--------------------CUACUAUUAAGUUUA (((...(((((((..(....)--..))))))).(((.((((.((.....)).))--)).)))........)----)--------------------).............. ( -21.60) >consensus GCUAUUGUGCAUAUGUGUGCA__UGGGUGCACUGCAAGAAAUGCAUUGUGCUUU___CAUGCCAAAAUAAAU__AAC__________UU_GGCA__UUAAUACUAAGUAUU ((....((((((.((((((((......))))).)))....))))))...))............................................................ (-14.08 = -13.76 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:41 2006