Locus 3601

Sequence ID 2R_DroMel_CAF1
Location 11,978,731 – 11,978,831
Length 100
Max. P 0.951573
window5867

overview

Window 7

Location 11,978,731 – 11,978,831
Length 100
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 78.06
Mean single sequence MFE -18.80
Consensus MFE -9.00
Energy contribution -9.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.99
Structure conservation index 0.48
SVM decision value 1.41
SVM RNA-class probability 0.951573
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11978731 100 + 20766785
AUUUCCCACCCACUCCAACCGUAGUACUCCCACUCCCAAC-UCCUGGGCAACCAAGCCCAAGGUUCCCUCUAUCGUUCCACUCUGUUGGAGUUACUUUGCU
...........((((((((.(.(((...............-...(((((......))))).((..(........)..)))))).))))))))......... ( -23.10)
>DroSim_CAF1 33446 100 + 1
AUUUCCCACCCACUCCAACCGUAGUACUCCCACUCCCAUU-CAAGGUUCGCCCAAACCCAAGGUUCCCUCUAUCGUUCCACUCUGUUGGAGUUACUUUGCU
...........((((((((.(.(((...............-...((((......))))...((..(........)..)))))).))))))))......... ( -16.70)
>DroEre_CAF1 30224 79 + 1
AUUUCCCACCCACUC--------------------CCACUGCAGGGC--ACCCACUCCCAAGGUUCCCUCUAUCGUUCCACUCUGUUGGAGUUACUUUGCU
...............--------------------.....((((((.--(((.........))).))).......(((((......)))))......))). ( -13.10)
>DroYak_CAF1 30648 93 + 1
AUUUCCCACCCACUCCAAC--------ACCCACUUCCACGGCAGGGAAAACCCAAACCCAAGGUUCCCUCUAUCGUUCCACUCUGUUGGAGUUACUUUGCU
...........((((((((--------(.........(((..((((..((((.........))))..))))..))).......)))))))))......... ( -22.29)
>consensus
AUUUCCCACCCACUCCAAC________UCCCACUCCCACU_CAGGGA_CACCCAAACCCAAGGUUCCCUCUAUCGUUCCACUCUGUUGGAGUUACUUUGCU
..........................................................((((((...(((((.((........)).)))))..)))))).. ( -9.00 =  -9.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:59:38 2006